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The map label for this gene is ygaF [H]

Identifier: 52784697

GI number: 52784697

Start: 917869

End: 918342

Strand: Direct

Name: ygaF [H]

Synonym: BLi00899

Alternate gene names: 52784697

Gene position: 917869-918342 (Clockwise)

Preceding gene: 52784694

Following gene: 52784698

Centisome position: 21.74

GC content: 46.41

Gene sequence:

>474_bases
ATGACTGTTGAAATTGGACAAAAGGTGCCTGATATTGAACTGCTGGGCGATCACGGAGAAAAAGTAAAGCTGTCGGATTT
TGAAGGAAAGTATGTCGTGCTCTATTTTTACCCGAAAGATATGACGCCGGGATGCACAACGGAAGCGTGCGATTTCAGAG
ACCGTCATGAAAGCTTTGCGGAACTTGATGCCGTCATTATCGGAGTCAGCCCCGACGATCAGGCAAGGCATGAAAAATTC
AAGCAAAAACACGATCTGCCGTTTCTGCTGCTCGTCGATGATGAACACAAGCTCGCTGAAAGCTTTGACGTATGGAAGCT
GAAGAAGAATTTCGGCAAGGAATACATGGGTGTCGAACGGTCGACATTCCTGATTGATAAAGAAGGCCGCCTTGTGAAAG
AGTGGCGGAAAGTAAAGGTAAAAGACCATGTCGCAGAAGCGCTTCAAGCAGTAAAAGAAATCGCGGAAGCATAA

Upstream 100 bases:

>100_bases
GACAGAGCGCAAAAAAGAAGCCGCCGAACATTTGAACAAGAGGGCGCTGTTTTTTATAATGGGGGAAAGCAAGCGATTAA
ACATAACAGGAGGCAAAACA

Downstream 100 bases:

>100_bases
AGCTCGCTGGGGAGGCCGGACTGTATTTTAGTTTGGTCTCTTTTTACGCTCATATTCGCCTGTCTGATCGGCCATGCTGA
TCATAGCGGCATTTTTCGCC

Product: YgaF

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTVEIGQKVPDIELLGDHGEKVKLSDFEGKYVVLYFYPKDMTPGCTTEACDFRDRHESFAELDAVIIGVSPDDQARHEKF
KQKHDLPFLLLVDDEHKLAESFDVWKLKKNFGKEYMGVERSTFLIDKEGRLVKEWRKVKVKDHVAEALQAVKEIAEA

Sequences:

>Translated_157_residues
MTVEIGQKVPDIELLGDHGEKVKLSDFEGKYVVLYFYPKDMTPGCTTEACDFRDRHESFAELDAVIIGVSPDDQARHEKF
KQKHDLPFLLLVDDEHKLAESFDVWKLKKNFGKEYMGVERSTFLIDKEGRLVKEWRKVKVKDHVAEALQAVKEIAEA
>Mature_156_residues
TVEIGQKVPDIELLGDHGEKVKLSDFEGKYVVLYFYPKDMTPGCTTEACDFRDRHESFAELDAVIIGVSPDDQARHEKFK
QKHDLPFLLLVDDEHKLAESFDVWKLKKNFGKEYMGVERSTFLIDKEGRLVKEWRKVKVKDHVAEALQAVKEIAEA

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32189392, Length=166, Percent_Identity=35.5421686746988, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI33188454, Length=77, Percent_Identity=44.1558441558442, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1788825, Length=153, Percent_Identity=37.9084967320261, Blast_Score=116, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI32565831, Length=128, Percent_Identity=33.59375, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193204376, Length=128, Percent_Identity=33.59375, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322180, Length=158, Percent_Identity=32.2784810126582, Blast_Score=78, Evalue=7e-16,
Organism=Drosophila melanogaster, GI17738015, Length=162, Percent_Identity=32.0987654320988, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 18112; Mature: 17981

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVEIGQKVPDIELLGDHGEKVKLSDFEGKYVVLYFYPKDMTPGCTTEACDFRDRHESFA
CEEECCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
ELDAVIIGVSPDDQARHEKFKQKHDLPFLLLVDDEHKLAESFDVWKLKKNFGKEYMGVER
HHEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCHHHHCCCC
STFLIDKEGRLVKEWRKVKVKDHVAEALQAVKEIAEA
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVEIGQKVPDIELLGDHGEKVKLSDFEGKYVVLYFYPKDMTPGCTTEACDFRDRHESFA
EEECCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
ELDAVIIGVSPDDQARHEKFKQKHDLPFLLLVDDEHKLAESFDVWKLKKNFGKEYMGVER
HHEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCHHHHCCCC
STFLIDKEGRLVKEWRKVKVKDHVAEALQAVKEIAEA
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]