Click here to switch to the map view.

The map label for this gene is yfhB [H]

Identifier: 52784670

GI number: 52784670

Start: 892635

End: 893531

Strand: Direct

Name: yfhB [H]

Synonym: BLi00872

Alternate gene names: 52784670

Gene position: 892635-893531 (Clockwise)

Preceding gene: 52784669

Following gene: 52784671

Centisome position: 21.14

GC content: 51.06

Gene sequence:

>897_bases
ATGAAGCCAATTGAAGTATTAAGATATGACGCATTTTCAAAGACTGCGGGTCAAGGAAATCCGGCGGGCATCGTGCTTGA
AGCAGACGGGTTGACCGATTGGGAGATGCAGAAGATCGCTGAACAGGCAGGCTATAATGAAACGGCTTTCCTGCTGCCGA
GCGAGTCGGCCGACATAAGGATCCGCTACTTTACGCCGGGCCATGAAATGAATTTATGCGGACATGCGACTGTTGCTTCT
CTTTATGCGCTTTTGGAAAAAGGCGCGATTGAAGCTGGCGCGGAGCTGAAGGTCGAAACAAAAGCGGGCGTCCTTTCTGT
GTATACCGCCTCAGACGGCAATCGGCGTTTTTTGGTGACGCTGGAGCAGGCGCCCCCGTGTTTTCAGTCTTTCACAGGAA
GCAGAAGCCAATTGGCGGAAGCGCTGGGGATCAGCGAAGCGGACTTTCATGAAGCATTGCCCGTTGTTTATGGAAGCACA
GGTATATGGACATTGCTTGTGCCGGTGAGAGATTTGGCCGCAATCCGCAGGATGAAGCCCGTTCAAGCTGAATTTCCGAA
CGTTTTAACCGAGATGCCGCGAGCATCTGTCCACCCGTTTTGCCTGGAGACGATCCATCGGGATTGCCAGCTTCACGGCA
GGCATTTTTCATCGCCTTATTCCGGAACGAGCGAAGATCCTGTCACAGGAACGGCATCAGGAGTGATGGGCGCTTATATG
AAAACGTTCGGAAAGGAATTCTGTGAAGAGGGCCAGACTGATTTTCAGATCGAACAGGGCCAGGAAATGGGGAAAGACGG
AAAAGTGAAAATCGAAGTTGCGGAACAAAACGGCATCATGAAAGTGCGCATGACAGGAACCGCTGTATTTGCTGAAAAGC
AAAGCTTTGAAGTGTAA

Upstream 100 bases:

>100_bases
ACGGCCTTTTTTTTATATTGCCATTGTAAGAAGCACTCAAAAGGCGGTATACTGCAAATGATTGGAAGGGAAGGATCGAA
TCGACAAATGGGGGATCAAA

Downstream 100 bases:

>100_bases
ACAAACACCGCCTTTTTTAGCGAGTGGAGATCATTGCAAACGCCAGCAGTTAACATTATAATCAACAATGATAATCATTT
TCATTAAGGGGGCGGCCACA

Product: YfhB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKPIEVLRYDAFSKTAGQGNPAGIVLEADGLTDWEMQKIAEQAGYNETAFLLPSESADIRIRYFTPGHEMNLCGHATVAS
LYALLEKGAIEAGAELKVETKAGVLSVYTASDGNRRFLVTLEQAPPCFQSFTGSRSQLAEALGISEADFHEALPVVYGST
GIWTLLVPVRDLAAIRRMKPVQAEFPNVLTEMPRASVHPFCLETIHRDCQLHGRHFSSPYSGTSEDPVTGTASGVMGAYM
KTFGKEFCEEGQTDFQIEQGQEMGKDGKVKIEVAEQNGIMKVRMTGTAVFAEKQSFEV

Sequences:

>Translated_298_residues
MKPIEVLRYDAFSKTAGQGNPAGIVLEADGLTDWEMQKIAEQAGYNETAFLLPSESADIRIRYFTPGHEMNLCGHATVAS
LYALLEKGAIEAGAELKVETKAGVLSVYTASDGNRRFLVTLEQAPPCFQSFTGSRSQLAEALGISEADFHEALPVVYGST
GIWTLLVPVRDLAAIRRMKPVQAEFPNVLTEMPRASVHPFCLETIHRDCQLHGRHFSSPYSGTSEDPVTGTASGVMGAYM
KTFGKEFCEEGQTDFQIEQGQEMGKDGKVKIEVAEQNGIMKVRMTGTAVFAEKQSFEV
>Mature_298_residues
MKPIEVLRYDAFSKTAGQGNPAGIVLEADGLTDWEMQKIAEQAGYNETAFLLPSESADIRIRYFTPGHEMNLCGHATVAS
LYALLEKGAIEAGAELKVETKAGVLSVYTASDGNRRFLVTLEQAPPCFQSFTGSRSQLAEALGISEADFHEALPVVYGST
GIWTLLVPVRDLAAIRRMKPVQAEFPNVLTEMPRASVHPFCLETIHRDCQLHGRHFSSPYSGTSEDPVTGTASGVMGAYM
KTFGKEFCEEGQTDFQIEQGQEMGKDGKVKIEVAEQNGIMKVRMTGTAVFAEKQSFEV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=282, Percent_Identity=29.4326241134752, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI74316009, Length=247, Percent_Identity=29.9595141700405, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI1787737, Length=293, Percent_Identity=33.4470989761092, Blast_Score=142, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17542160, Length=111, Percent_Identity=36.9369369369369, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17542154, Length=111, Percent_Identity=36.9369369369369, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17542158, Length=111, Percent_Identity=39.6396396396396, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17542152, Length=111, Percent_Identity=39.6396396396396, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32540; Mature: 32540

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIEVLRYDAFSKTAGQGNPAGIVLEADGLTDWEMQKIAEQAGYNETAFLLPSESADIR
CCCHHHEEECCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEE
IRYFTPGHEMNLCGHATVASLYALLEKGAIEAGAELKVETKAGVLSVYTASDGNRRFLVT
EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEE
LEQAPPCFQSFTGSRSQLAEALGISEADFHEALPVVYGSTGIWTLLVPVRDLAAIRRMKP
ECCCCCHHHHHCCCHHHHHHHHCCCHHHHHHCCCEEECCCCCEEEHHHHHHHHHHHHCCC
VQAEFPNVLTEMPRASVHPFCLETIHRDCQLHGRHFSSPYSGTSEDPVTGTASGVMGAYM
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
KTFGKEFCEEGQTDFQIEQGQEMGKDGKVKIEVAEQNGIMKVRMTGTAVFAEKQSFEV
HHHHHHHHHCCCCCEEECCCHHCCCCCCEEEEEECCCCEEEEEEECEEEEECCCCCCC
>Mature Secondary Structure
MKPIEVLRYDAFSKTAGQGNPAGIVLEADGLTDWEMQKIAEQAGYNETAFLLPSESADIR
CCCHHHEEECCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEE
IRYFTPGHEMNLCGHATVASLYALLEKGAIEAGAELKVETKAGVLSVYTASDGNRRFLVT
EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEE
LEQAPPCFQSFTGSRSQLAEALGISEADFHEALPVVYGSTGIWTLLVPVRDLAAIRRMKP
ECCCCCHHHHHCCCHHHHHHHHCCCHHHHHHCCCEEECCCCCEEEHHHHHHHHHHHHCCC
VQAEFPNVLTEMPRASVHPFCLETIHRDCQLHGRHFSSPYSGTSEDPVTGTASGVMGAYM
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
KTFGKEFCEEGQTDFQIEQGQEMGKDGKVKIEVAEQNGIMKVRMTGTAVFAEKQSFEV
HHHHHHHHHCCCCCEEECCCHHCCCCCCEEEEEECCCCEEEEEEECEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]