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The map label for this gene is xynB [H]

Identifier: 52784662

GI number: 52784662

Start: 883993

End: 885540

Strand: Direct

Name: xynB [H]

Synonym: BLi00864

Alternate gene names: 52784662

Gene position: 883993-885540 (Clockwise)

Preceding gene: 52784661

Following gene: 52784664

Centisome position: 20.93

GC content: 50.65

Gene sequence:

>1548_bases
ATGAGCGGTGAACACACATATACGAACCCGGTGTTGACCGGTTTTCATCCGGACCCTTCAATTATCAGAGTCGGGGAAGA
TTATTACATGGTGAACTCAACGTTCCAGTATTTCCCGGCAATCGTTATTTCCCACTCTAAAGATTTAGTCCATTGGAAGA
TCATCGGCCACGGAATCACGGAAAATGAAGGATTGGACCTGTCGGATATCAATGATTCGCACGGCATTTGGGCGCCTGAT
ATTTCGTATCATAACGGAACCTTCTACATCTTCGCGACGCACAGGCTGAACGGACCGACTGTCATCAACGGCCGAAAGCT
GATCCGCAGACAGATTATGATCAAGTCCAGCCGCCCCGAAGGGCCTTATTCAAAGCCCGTTTTCATTGATGAAGGCAGCG
GCATCGATCCTTCTCACTTCGTTGACGGCGACGGGAAACACTATATGCTGCTCAGTCCTGCCTGCACGCTCTTTCCTCTA
AATGAAGAATGCACAGACATCTCCGGCGAGCCGGTTCAGATATGGGAAGGGACTGGGAGAAGGGCGCCTGAAGGGCCGCA
TTTGCTGAAAAAAGACGGTTATTACTACGCGATATTGGCAGAAGGAGGAACCGGATATTCCCACTCGATTACGACAGCCC
GCTCAACGCATTTGTACGGTCCTTATGAGCCCTGCCCGTATAATCCGATTTTAACGCAGACAGACCCGGATGCTCCGATT
CAAAGAGCAGGACACGGCAAGCTCGTTGAAACCCAGAATGGAGAATGGTGGGCGGTGTATCTATGCGGACGGCCCAATCA
AGGTAGCTATACAACGGTTGGGAGGGAGACCGCTTTGGATCCCGTCGAATGGACGGATGACGGCTGGTTTGTCATCAACA
ACTTGAAGGGCCCGAGTCTTGTTCAGCGCGCTCCAAACCTCCCCCAAGTCAAATGGGATGAAAAGAATTTCGACGATTTT
GACGAGGATACGCTCGGTCTTGACTGGCAGTTTGTCAGGAATCCCGATCATTCCAGCTGGTCTTTGATCGAGAGACCGGG
ATATCTCAGGCTGTGGACAGGTGATTGGGATTTACATGACATCCGTGCAAAAAATACGGTCGTCAGAAGGGAAAAGCACC
ACCTATACAGCGCCGGCGTGAAACTCGACTTTTCACCTTCGGCCTCCGGAGAGCAAGCGGGGATCGTCTGCTACTACAGC
ACGAATAATTATTTGAAATGCTGCTTGATCTATGAAGAAGGATTGAAGATCAAGGTCGTGGAAAATCGCTCCGGTTGCCA
AAAAACGCTGGGGAAAAAACATGCCGAGGCCGGCCCGCTGTTTCTGAAAGCTGTCATCAATAAGCAAAAGAGGGATTTTT
ACTACAGTTATGAAGGGAAGCATTGGCACCACGCGGGCGGTACAGAGGACGCCAGTTTTTTAAGCGATGAGGGTTCGCGT
GACGCAAAGGGACATACGGGAACGATGGTCGGGATATTCGCCAATAACGGCGGAAGCGGCAGAAAGGCTGCCGCTGATTT
TGACTGGTTCCGCTATATTGCATATTAA

Upstream 100 bases:

>100_bases
AAAGCAGGTGTATATTGCGCCGATACCGGCGGAGAAGACGGACAGGACGGATGGTGCGATATCGAATGGTTCAGTGTCGA
ACCGGCAGGAGGGGAATGCC

Downstream 100 bases:

>100_bases
ATGTCTCTGCTTTTTTTCCTGTATTGAAGCGGCGGGATGCCGACGATCTCTTTAAACACTTTATTGAAATGGCTGATATG
CTTAAAACCGGTATCCGCAG

Product: XynB

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSGEHTYTNPVLTGFHPDPSIIRVGEDYYMVNSTFQYFPAIVISHSKDLVHWKIIGHGITENEGLDLSDINDSHGIWAPD
ISYHNGTFYIFATHRLNGPTVINGRKLIRRQIMIKSSRPEGPYSKPVFIDEGSGIDPSHFVDGDGKHYMLLSPACTLFPL
NEECTDISGEPVQIWEGTGRRAPEGPHLLKKDGYYYAILAEGGTGYSHSITTARSTHLYGPYEPCPYNPILTQTDPDAPI
QRAGHGKLVETQNGEWWAVYLCGRPNQGSYTTVGRETALDPVEWTDDGWFVINNLKGPSLVQRAPNLPQVKWDEKNFDDF
DEDTLGLDWQFVRNPDHSSWSLIERPGYLRLWTGDWDLHDIRAKNTVVRREKHHLYSAGVKLDFSPSASGEQAGIVCYYS
TNNYLKCCLIYEEGLKIKVVENRSGCQKTLGKKHAEAGPLFLKAVINKQKRDFYYSYEGKHWHHAGGTEDASFLSDEGSR
DAKGHTGTMVGIFANNGGSGRKAAADFDWFRYIAY

Sequences:

>Translated_515_residues
MSGEHTYTNPVLTGFHPDPSIIRVGEDYYMVNSTFQYFPAIVISHSKDLVHWKIIGHGITENEGLDLSDINDSHGIWAPD
ISYHNGTFYIFATHRLNGPTVINGRKLIRRQIMIKSSRPEGPYSKPVFIDEGSGIDPSHFVDGDGKHYMLLSPACTLFPL
NEECTDISGEPVQIWEGTGRRAPEGPHLLKKDGYYYAILAEGGTGYSHSITTARSTHLYGPYEPCPYNPILTQTDPDAPI
QRAGHGKLVETQNGEWWAVYLCGRPNQGSYTTVGRETALDPVEWTDDGWFVINNLKGPSLVQRAPNLPQVKWDEKNFDDF
DEDTLGLDWQFVRNPDHSSWSLIERPGYLRLWTGDWDLHDIRAKNTVVRREKHHLYSAGVKLDFSPSASGEQAGIVCYYS
TNNYLKCCLIYEEGLKIKVVENRSGCQKTLGKKHAEAGPLFLKAVINKQKRDFYYSYEGKHWHHAGGTEDASFLSDEGSR
DAKGHTGTMVGIFANNGGSGRKAAADFDWFRYIAY
>Mature_514_residues
SGEHTYTNPVLTGFHPDPSIIRVGEDYYMVNSTFQYFPAIVISHSKDLVHWKIIGHGITENEGLDLSDINDSHGIWAPDI
SYHNGTFYIFATHRLNGPTVINGRKLIRRQIMIKSSRPEGPYSKPVFIDEGSGIDPSHFVDGDGKHYMLLSPACTLFPLN
EECTDISGEPVQIWEGTGRRAPEGPHLLKKDGYYYAILAEGGTGYSHSITTARSTHLYGPYEPCPYNPILTQTDPDAPIQ
RAGHGKLVETQNGEWWAVYLCGRPNQGSYTTVGRETALDPVEWTDDGWFVINNLKGPSLVQRAPNLPQVKWDEKNFDDFD
EDTLGLDWQFVRNPDHSSWSLIERPGYLRLWTGDWDLHDIRAKNTVVRREKHHLYSAGVKLDFSPSASGEQAGIVCYYST
NNYLKCCLIYEEGLKIKVVENRSGCQKTLGKKHAEAGPLFLKAVINKQKRDFYYSYEGKHWHHAGGTEDASFLSDEGSRD
AKGHTGTMVGIFANNGGSGRKAAADFDWFRYIAY

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=545, Percent_Identity=33.9449541284404, Blast_Score=282, Evalue=4e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 57935; Mature: 57804

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGEHTYTNPVLTGFHPDPSIIRVGEDYYMVNSTFQYFPAIVISHSKDLVHWKIIGHGIT
CCCCCEECCCEEECCCCCCCEEEECCCEEEECCCHHHCCEEEEECCCCEEEEEEEECCCC
ENEGLDLSDINDSHGIWAPDISYHNGTFYIFATHRLNGPTVINGRKLIRRQIMIKSSRPE
CCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEECCCCEEECHHHHHEEEEEEECCCCC
GPYSKPVFIDEGSGIDPSHFVDGDGKHYMLLSPACTLFPLNEECTDISGEPVQIWEGTGR
CCCCCCEEEECCCCCCCCCEECCCCCEEEEECCCEEEEECCCHHCCCCCCEEEEEECCCC
RAPEGPHLLKKDGYYYAILAEGGTGYSHSITTARSTHLYGPYEPCPYNPILTQTDPDAPI
CCCCCCCEEECCCEEEEEEECCCCCCCCEEEEECCEEECCCCCCCCCCCEECCCCCCCCH
QRAGHGKLVETQNGEWWAVYLCGRPNQGSYTTVGRETALDPVEWTDDGWFVINNLKGPSL
HHCCCCCEEECCCCCEEEEEEECCCCCCCEEECCCHHCCCCCEECCCCEEEEECCCCCHH
VQRAPNLPQVKWDEKNFDDFDEDTLGLDWQFVRNPDHSSWSLIERPGYLRLWTGDWDLHD
HHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCEEEEECCCCCCEE
IRAKNTVVRREKHHLYSAGVKLDFSPSASGEQAGIVCYYSTNNYLKCCLIYEEGLKIKVV
ECCCCHHHHHHHHHEEECCEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEEEE
ENRSGCQKTLGKKHAEAGPLFLKAVINKQKRDFYYSYEGKHWHHAGGTEDASFLSDEGSR
ECCCCHHHHHHHHCCCCCCCHHEEHHCCCCCCEEEEECCCEEECCCCCCCHHHHCCCCCC
DAKGHTGTMVGIFANNGGSGRKAAADFDWFRYIAY
CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHEECC
>Mature Secondary Structure 
SGEHTYTNPVLTGFHPDPSIIRVGEDYYMVNSTFQYFPAIVISHSKDLVHWKIIGHGIT
CCCCEECCCEEECCCCCCCEEEECCCEEEECCCHHHCCEEEEECCCCEEEEEEEECCCC
ENEGLDLSDINDSHGIWAPDISYHNGTFYIFATHRLNGPTVINGRKLIRRQIMIKSSRPE
CCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEECCCCEEECHHHHHEEEEEEECCCCC
GPYSKPVFIDEGSGIDPSHFVDGDGKHYMLLSPACTLFPLNEECTDISGEPVQIWEGTGR
CCCCCCEEEECCCCCCCCCEECCCCCEEEEECCCEEEEECCCHHCCCCCCEEEEEECCCC
RAPEGPHLLKKDGYYYAILAEGGTGYSHSITTARSTHLYGPYEPCPYNPILTQTDPDAPI
CCCCCCCEEECCCEEEEEEECCCCCCCCEEEEECCEEECCCCCCCCCCCEECCCCCCCCH
QRAGHGKLVETQNGEWWAVYLCGRPNQGSYTTVGRETALDPVEWTDDGWFVINNLKGPSL
HHCCCCCEEECCCCCEEEEEEECCCCCCCEEECCCHHCCCCCEECCCCEEEEECCCCCHH
VQRAPNLPQVKWDEKNFDDFDEDTLGLDWQFVRNPDHSSWSLIERPGYLRLWTGDWDLHD
HHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCEEEEECCCCCCEE
IRAKNTVVRREKHHLYSAGVKLDFSPSASGEQAGIVCYYSTNNYLKCCLIYEEGLKIKVV
ECCCCHHHHHHHHHEEECCEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEEEE
ENRSGCQKTLGKKHAEAGPLFLKAVINKQKRDFYYSYEGKHWHHAGGTEDASFLSDEGSR
ECCCCHHHHHHHHCCCCCCCHHEEHHCCCCCCEEEEECCCEEECCCCCCCHHHHCCCCCC
DAKGHTGTMVGIFANNGGSGRKAAADFDWFRYIAY
CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]