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The map label for this gene is yagH [C]

Identifier: 52784661

GI number: 52784661

Start: 882399

End: 884003

Strand: Direct

Name: yagH [C]

Synonym: BLi00863

Alternate gene names: 52784661

Gene position: 882399-884003 (Clockwise)

Preceding gene: 52784660

Following gene: 52784662

Centisome position: 20.9

GC content: 51.28

Gene sequence:

>1605_bases
ATGGCAAAAAGCCTGACTGGCAAGGCGAAACATCATCCGCCTGTCTGGAATCCGAACATTGACGGCGGGCGGTTTTGCAA
TCCCGTTCTTTTCATGGACTACTCAGATCCGGATGTCATTCGGAAAGGCAGCGACTTTTTTATGGCGGCTTCAAGTTTTT
CCTGTTTTCCCGGAATTCCCATTTTGCACTCGACAGATTTGGTGAACTGGTCATTGATCAGCCATGTGTTTGACGAGCTC
CCCTTCGGCGAATATGAGGCCCCTGCTCATGGCAAAGGAGCGTGGGCGCCGAGCATTCGATACCATAACGGAGAATTCTG
GGTGTATTTCGCAACGCCTGATGAAGGAATCTTCATGAGCAAAACATCAGATCCGTTTAAAGGATGGGAGCCTCTCATAC
AGGTCAAAAAGACAAAGGGCTGGATTGATCCTTGTCCATTTTGGGATGACGATGGAAATGCCTATCTGATCCATGCTTAC
GCAAACAGCAGAATCGGGATCAAGAGCAAGCTGAATCTTTGCCGAATGAAAAAAGACGGAACGGCTTTGGAAGACGATGG
AGAAATCGTCTTTGACGGCACGCTGAACCACCCTACGATTGAAGGACCGAAATTGTATAAAAAAGACGGCTATTATTATA
TCTTTGCTCCGGCGGGAGGGGTGAAGACAGGCTGGCAGACGGTTTTGCGGAGCAAGCAGATTTACGGTCCCTATGAAGAC
AAGGTTGTCCTTCACCAAGGAAATACGGTCATTAACGGTCCGCACCAGGGAGGCTGGGTTGAACTTGATTCCGGAGAGTC
ATGGTTTATCCACTTTCAAGATCGCGGAGCATTCGGCAGAGTTGTGCAACTTCAACCTGTCCGCTGGTTCGACGGCTGGC
CGCTGATGGGTGAAGACATAAACGGCGACGGGATCGGAGAACCGGTTTTGCATTGGGAAAAGCCGAAGACGGGCGCCAAA
GAAGTGAAACTGCCCTTTGATCATGGCAATGATGATTTTTCTTCTTCAGACCGCCTTGCGCTTCATTGGCAATGGGAAGC
GAATCCGAAGCAAGAATGGTACTCTCTCAGCGCCAGTCCCGGCCGGCTTCGCTTATACAGCCGCGGCATCGCTCATCCGT
TCAAACTGAGCCGCCTGCCGAACCTTCTGATGCAGAAATTTTCGGGGCCAAGCTTCACAGCAACGGTCAAATTGTCGCTA
AACGCCTTGTCGGAAACTATGATGGCCGGCTTGGCTGTCATGGGAAGGGAATACGCCTATCTCGGCTTCTCGAAATCAGA
AAACGGTTATCGGCTTTCTGTATACGAAGGCCGTATAGAAGGTGATCAGGAAGATGTCAAAACAGAAGAGCGCGGCGTAC
ATGCGGAAATGGTCTATTTGCGCGTGACTGTTGATGAACAGGCGGTCTGCCGTTTCAGCTGCAGCATGGACCGGCGTCAT
TTCACACAGATTGGGAATTCGTTTCAGGCTGTTCCCGGACTGTGGACGGGTGCCAAAGCAGGTGTATATTGCGCCGATAC
CGGCGGAGAAGACGGACAGGACGGATGGTGCGATATCGAATGGTTCAGTGTCGAACCGGCAGGAGGGGAATGCCATGAGC
GGTGA

Upstream 100 bases:

>100_bases
AAGCAAAGAATGAGAAGAAACAGACATTAATAACAAAGATTCAGGGGCAGCAGCTATGCTAACATGAATTTGAAAATCTG
GAAATGAGGGGTGAAGGTTG

Downstream 100 bases:

>100_bases
ACACACATATACGAACCCGGTGTTGACCGGTTTTCATCCGGACCCTTCAATTATCAGAGTCGGGGAAGATTATTACATGG
TGAACTCAACGTTCCAGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MAKSLTGKAKHHPPVWNPNIDGGRFCNPVLFMDYSDPDVIRKGSDFFMAASSFSCFPGIPILHSTDLVNWSLISHVFDEL
PFGEYEAPAHGKGAWAPSIRYHNGEFWVYFATPDEGIFMSKTSDPFKGWEPLIQVKKTKGWIDPCPFWDDDGNAYLIHAY
ANSRIGIKSKLNLCRMKKDGTALEDDGEIVFDGTLNHPTIEGPKLYKKDGYYYIFAPAGGVKTGWQTVLRSKQIYGPYED
KVVLHQGNTVINGPHQGGWVELDSGESWFIHFQDRGAFGRVVQLQPVRWFDGWPLMGEDINGDGIGEPVLHWEKPKTGAK
EVKLPFDHGNDDFSSSDRLALHWQWEANPKQEWYSLSASPGRLRLYSRGIAHPFKLSRLPNLLMQKFSGPSFTATVKLSL
NALSETMMAGLAVMGREYAYLGFSKSENGYRLSVYEGRIEGDQEDVKTEERGVHAEMVYLRVTVDEQAVCRFSCSMDRRH
FTQIGNSFQAVPGLWTGAKAGVYCADTGGEDGQDGWCDIEWFSVEPAGGECHER

Sequences:

>Translated_534_residues
MAKSLTGKAKHHPPVWNPNIDGGRFCNPVLFMDYSDPDVIRKGSDFFMAASSFSCFPGIPILHSTDLVNWSLISHVFDEL
PFGEYEAPAHGKGAWAPSIRYHNGEFWVYFATPDEGIFMSKTSDPFKGWEPLIQVKKTKGWIDPCPFWDDDGNAYLIHAY
ANSRIGIKSKLNLCRMKKDGTALEDDGEIVFDGTLNHPTIEGPKLYKKDGYYYIFAPAGGVKTGWQTVLRSKQIYGPYED
KVVLHQGNTVINGPHQGGWVELDSGESWFIHFQDRGAFGRVVQLQPVRWFDGWPLMGEDINGDGIGEPVLHWEKPKTGAK
EVKLPFDHGNDDFSSSDRLALHWQWEANPKQEWYSLSASPGRLRLYSRGIAHPFKLSRLPNLLMQKFSGPSFTATVKLSL
NALSETMMAGLAVMGREYAYLGFSKSENGYRLSVYEGRIEGDQEDVKTEERGVHAEMVYLRVTVDEQAVCRFSCSMDRRH
FTQIGNSFQAVPGLWTGAKAGVYCADTGGEDGQDGWCDIEWFSVEPAGGECHER
>Mature_533_residues
AKSLTGKAKHHPPVWNPNIDGGRFCNPVLFMDYSDPDVIRKGSDFFMAASSFSCFPGIPILHSTDLVNWSLISHVFDELP
FGEYEAPAHGKGAWAPSIRYHNGEFWVYFATPDEGIFMSKTSDPFKGWEPLIQVKKTKGWIDPCPFWDDDGNAYLIHAYA
NSRIGIKSKLNLCRMKKDGTALEDDGEIVFDGTLNHPTIEGPKLYKKDGYYYIFAPAGGVKTGWQTVLRSKQIYGPYEDK
VVLHQGNTVINGPHQGGWVELDSGESWFIHFQDRGAFGRVVQLQPVRWFDGWPLMGEDINGDGIGEPVLHWEKPKTGAKE
VKLPFDHGNDDFSSSDRLALHWQWEANPKQEWYSLSASPGRLRLYSRGIAHPFKLSRLPNLLMQKFSGPSFTATVKLSLN
ALSETMMAGLAVMGREYAYLGFSKSENGYRLSVYEGRIEGDQEDVKTEERGVHAEMVYLRVTVDEQAVCRFSCSMDRRHF
TQIGNSFQAVPGLWTGAKAGVYCADTGGEDGQDGWCDIEWFSVEPAGGECHER

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=560, Percent_Identity=27.3214285714286, Blast_Score=142, Evalue=8e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 59971; Mature: 59840

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSLTGKAKHHPPVWNPNIDGGRFCNPVLFMDYSDPDVIRKGSDFFMAASSFSCFPGIP
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCEEEEECCCCCCCCCC
ILHSTDLVNWSLISHVFDELPFGEYEAPAHGKGAWAPSIRYHNGEFWVYFATPDEGIFMS
EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEEE
KTSDPFKGWEPLIQVKKTKGWIDPCPFWDDDGNAYLIHAYANSRIGIKSKLNLCRMKKDG
CCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHCCCEEEECCCC
TALEDDGEIVFDGTLNHPTIEGPKLYKKDGYYYIFAPAGGVKTGWQTVLRSKQIYGPYED
CEECCCCCEEEECCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCC
KVVLHQGNTVINGPHQGGWVELDSGESWFIHFQDRGAFGRVVQLQPVRWFDGWPLMGEDI
EEEEEECCEEEECCCCCCEEEECCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCC
NGDGIGEPVLHWEKPKTGAKEVKLPFDHGNDDFSSSDRLALHWQWEANPKQEWYSLSASP
CCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHEEECCCC
GRLRLYSRGIAHPFKLSRLPNLLMQKFSGPSFTATVKLSLNALSETMMAGLAVMGREYAY
CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCEEE
LGFSKSENGYRLSVYEGRIEGDQEDVKTEERGVHAEMVYLRVTVDEQAVCRFSCSMDRRH
EEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCHHH
FTQIGNSFQAVPGLWTGAKAGVYCADTGGEDGQDGWCDIEWFSVEPAGGECHER
HHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
AKSLTGKAKHHPPVWNPNIDGGRFCNPVLFMDYSDPDVIRKGSDFFMAASSFSCFPGIP
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCEEEEECCCCCCCCCC
ILHSTDLVNWSLISHVFDELPFGEYEAPAHGKGAWAPSIRYHNGEFWVYFATPDEGIFMS
EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEEE
KTSDPFKGWEPLIQVKKTKGWIDPCPFWDDDGNAYLIHAYANSRIGIKSKLNLCRMKKDG
CCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHCCCEEEECCCC
TALEDDGEIVFDGTLNHPTIEGPKLYKKDGYYYIFAPAGGVKTGWQTVLRSKQIYGPYED
CEECCCCCEEEECCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCC
KVVLHQGNTVINGPHQGGWVELDSGESWFIHFQDRGAFGRVVQLQPVRWFDGWPLMGEDI
EEEEEECCEEEECCCCCCEEEECCCCEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCC
NGDGIGEPVLHWEKPKTGAKEVKLPFDHGNDDFSSSDRLALHWQWEANPKQEWYSLSASP
CCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHEEECCCC
GRLRLYSRGIAHPFKLSRLPNLLMQKFSGPSFTATVKLSLNALSETMMAGLAVMGREYAY
CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCEEE
LGFSKSENGYRLSVYEGRIEGDQEDVKTEERGVHAEMVYLRVTVDEQAVCRFSCSMDRRH
EEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCHHH
FTQIGNSFQAVPGLWTGAKAGVYCADTGGEDGQDGWCDIEWFSVEPAGGECHER
HHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA