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The map label for this gene is ydhC [H]

Identifier: 52784307

GI number: 52784307

Start: 494144

End: 494824

Strand: Reverse

Name: ydhC [H]

Synonym: BLi00487

Alternate gene names: 52784307

Gene position: 494824-494144 (Counterclockwise)

Preceding gene: 52784331

Following gene: 52784301

Centisome position: 11.72

GC content: 46.26

Gene sequence:

>681_bases
GTGAAGTTTTCGATCCAACGTGCAGTCTCTTATCATGATCAAGTCCATCATTATTTAAAAGATATGATTATTAAAGGAGG
ATATCAGCCCGGCGAACGGATCTATGAATCCAAAATCGCCAAGGAGCTGCAAGTGAGCCGCAGCCCCGTCAGAGAGGCGA
TTCGGACACTTGAACAAGAAGGCCTGTTATTGATAGATGATAAATCAAAAATTACAGTTTATGAACCGACAATCAAAGAT
CTTGAAGAAATATACCAATGCCGTCAGGCGCTCGAATCCCTGGCCGTTTCTTTGGCGACTCGCCTTGCCTCTAATGAAAC
ACTGGAGCTCATTTCCGAAACGCTCTCTGAGGCGCATAAGCACCAGAAAAGCCAAGGTCCGGAGTCGGCTAATGCTCTGC
TTCGCCTAAATACGCAATTTCATGATGCCATCATCGAAGCGAGCGAAAACGAACGCCTGCAAAAACAGCTGCTTGATTTA
CGGTCGCTGACCTTTTTCTACCGGAGCAAAAACCTTGAAAAACCGGAGCGCACTCTTGAAATCATCAATCAGCACGAGGA
GATTCTGCGTCACATGCAGGACAGAAATGACGCAAAAGCAGCCGAATCAATGAGGAAGCATATAGAGGCAGACCTTTGCT
ACTTAAAAGAGGTGTTGTTCAGAAGCAGTGCCGCACGCTAA

Upstream 100 bases:

>100_bases
AAAATACTCAATATTATGGTAATTTTAGATTGATGGTATTTCTCTCTTTTTGCTAGACTATTAGTGATTTCCGCAGTGAA
AAATAAACGAGGTGAACAGC

Downstream 100 bases:

>100_bases
AAAAGCAGGGTTCCCCCTGCTTTTTTCAGCTCTGACAGACAAATTCGGCTGTTCGGTTGATCTCTTTGATGACATCCGGC
AGGCGATCGCGATCATTCAC

Product: YdhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MKFSIQRAVSYHDQVHHYLKDMIIKGGYQPGERIYESKIAKELQVSRSPVREAIRTLEQEGLLLIDDKSKITVYEPTIKD
LEEIYQCRQALESLAVSLATRLASNETLELISETLSEAHKHQKSQGPESANALLRLNTQFHDAIIEASENERLQKQLLDL
RSLTFFYRSKNLEKPERTLEIINQHEEILRHMQDRNDAKAAESMRKHIEADLCYLKEVLFRSSAAR

Sequences:

>Translated_226_residues
MKFSIQRAVSYHDQVHHYLKDMIIKGGYQPGERIYESKIAKELQVSRSPVREAIRTLEQEGLLLIDDKSKITVYEPTIKD
LEEIYQCRQALESLAVSLATRLASNETLELISETLSEAHKHQKSQGPESANALLRLNTQFHDAIIEASENERLQKQLLDL
RSLTFFYRSKNLEKPERTLEIINQHEEILRHMQDRNDAKAAESMRKHIEADLCYLKEVLFRSSAAR
>Mature_226_residues
MKFSIQRAVSYHDQVHHYLKDMIIKGGYQPGERIYESKIAKELQVSRSPVREAIRTLEQEGLLLIDDKSKITVYEPTIKD
LEEIYQCRQALESLAVSLATRLASNETLELISETLSEAHKHQKSQGPESANALLRLNTQFHDAIIEASENERLQKQLLDL
RSLTFFYRSKNLEKPERTLEIINQHEEILRHMQDRNDAKAAESMRKHIEADLCYLKEVLFRSSAAR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=201, Percent_Identity=26.3681592039801, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790780, Length=223, Percent_Identity=28.6995515695067, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26232; Mature: 26232

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSIQRAVSYHDQVHHYLKDMIIKGGYQPGERIYESKIAKELQVSRSPVREAIRTLEQE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLLLIDDKSKITVYEPTIKDLEEIYQCRQALESLAVSLATRLASNETLELISETLSEAHK
CEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
HQKSQGPESANALLRLNTQFHDAIIEASENERLQKQLLDLRSLTFFYRSKNLEKPERTLE
HHHHCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IINQHEEILRHMQDRNDAKAAESMRKHIEADLCYLKEVLFRSSAAR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKFSIQRAVSYHDQVHHYLKDMIIKGGYQPGERIYESKIAKELQVSRSPVREAIRTLEQE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLLLIDDKSKITVYEPTIKDLEEIYQCRQALESLAVSLATRLASNETLELISETLSEAHK
CEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
HQKSQGPESANALLRLNTQFHDAIIEASENERLQKQLLDLRSLTFFYRSKNLEKPERTLE
HHHHCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IINQHEEILRHMQDRNDAKAAESMRKHIEADLCYLKEVLFRSSAAR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]