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The map label for this gene is ycnK [H]

Identifier: 52784301

GI number: 52784301

Start: 484367

End: 484939

Strand: Reverse

Name: ycnK [H]

Synonym: BLi00481

Alternate gene names: 52784301

Gene position: 484939-484367 (Counterclockwise)

Preceding gene: 52784307

Following gene: 52784300

Centisome position: 11.48

GC content: 48.69

Gene sequence:

>573_bases
ATGCTACCGATTAAAAGAAGGGAGCAGATTTTGGCTTGGATCAAAGAAGAAGAATCTCTGCGCATTTCGGAAATTTCGAA
AAGGCTGAACGTCTCTGAAATGACCGTTTACCGCGACATTAAACCGCTCGTTGAAAACGGGCAGGTCATCAAGACCGCAG
GCGGAATTACGCTAAACAAGCCGAAGCAGCAGCTTGGGCAGCTTTGCGTCGTTTGCGGAAAAGGGGCAGGTTCGAGGCTT
GCCGTGCAAATTGTCAAAAACGACAGCCAAATTGAACAGTTTTGCTGCGTGCATTGCGCAATGCTCCGCTATGAGAAAGT
GAAAGATGATGTATCACAGATTATCTGCAGGGATTTTTTGCTGGATACGACGATCAGCGCCAAAGCTGCCGTCTTTTTGC
TGGATACAGATCTTCATTTGAACTGCTGCGAGCCGCATGCGCTCCCTTTCGCTTCTGAAGCAGAAGCGCGGAAATTCAAA
AAAGGCTTTGGCGGACAGCTGTTATCGTTTGACGATGCCGCGCTTCTGGTCCAGAAAACGATGAAGAACAGCTGCTGCAG
CCTGAAGACATGA

Upstream 100 bases:

>100_bases
AGTTCAACATTTCATCACATTTTTTATCACGTTCCGCTTGTTTCTTTTCCTTCAATCTACTAGGCTTATAAGTACAGAAC
ATAAAGAACGGGGGAGGAGA

Downstream 100 bases:

>100_bases
AATTTTGTTAAGAGATTGGATGAATGTGATGAAAAGAGCAACACTCTGGGCAGTTCTGGCTGTTCTTTGTACCATTCTGC
TGCCAAAAGCCGCTTTTGCT

Product: YcnK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLPIKRREQILAWIKEEESLRISEISKRLNVSEMTVYRDIKPLVENGQVIKTAGGITLNKPKQQLGQLCVVCGKGAGSRL
AVQIVKNDSQIEQFCCVHCAMLRYEKVKDDVSQIICRDFLLDTTISAKAAVFLLDTDLHLNCCEPHALPFASEAEARKFK
KGFGGQLLSFDDAALLVQKTMKNSCCSLKT

Sequences:

>Translated_190_residues
MLPIKRREQILAWIKEEESLRISEISKRLNVSEMTVYRDIKPLVENGQVIKTAGGITLNKPKQQLGQLCVVCGKGAGSRL
AVQIVKNDSQIEQFCCVHCAMLRYEKVKDDVSQIICRDFLLDTTISAKAAVFLLDTDLHLNCCEPHALPFASEAEARKFK
KGFGGQLLSFDDAALLVQKTMKNSCCSLKT
>Mature_190_residues
MLPIKRREQILAWIKEEESLRISEISKRLNVSEMTVYRDIKPLVENGQVIKTAGGITLNKPKQQLGQLCVVCGKGAGSRL
AVQIVKNDSQIEQFCCVHCAMLRYEKVKDDVSQIICRDFLLDTTISAKAAVFLLDTDLHLNCCEPHALPFASEAEARKFK
KGFGGQLLSFDDAALLVQKTMKNSCCSLKT

Specific function: May act as a negative transcriptional regulator of ycnJ in the presence of copper. May use copper as a corepressor [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001034
- InterPro:   IPR008719
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08220 HTH_DeoR; PF05573 NosL [H]

EC number: NA

Molecular weight: Translated: 21190; Mature: 21190

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPIKRREQILAWIKEEESLRISEISKRLNVSEMTVYRDIKPLVENGQVIKTAGGITLNK
CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCEEECC
PKQQLGQLCVVCGKGAGSRLAVQIVKNDSQIEQFCCVHCAMLRYEKVKDDVSQIICRDFL
HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDTTISAKAAVFLLDTDLHLNCCEPHALPFASEAEARKFKKGFGGQLLSFDDAALLVQKT
HHCCCCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHCCCCCEECCCHHHHHHHHH
MKNSCCSLKT
HHHCCCCCCC
>Mature Secondary Structure
MLPIKRREQILAWIKEEESLRISEISKRLNVSEMTVYRDIKPLVENGQVIKTAGGITLNK
CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCEEECC
PKQQLGQLCVVCGKGAGSRLAVQIVKNDSQIEQFCCVHCAMLRYEKVKDDVSQIICRDFL
HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDTTISAKAAVFLLDTDLHLNCCEPHALPFASEAEARKFKKGFGGQLLSFDDAALLVQKT
HHCCCCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHCCCCCEECCCHHHHHHHHH
MKNSCCSLKT
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]