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The map label for this gene is yckB [H]

Identifier: 52784206

GI number: 52784206

Start: 360942

End: 361817

Strand: Reverse

Name: yckB [H]

Synonym: BLi00384

Alternate gene names: 52784206

Gene position: 361817-360942 (Counterclockwise)

Preceding gene: 52784210

Following gene: 52784205

Centisome position: 8.57

GC content: 44.29

Gene sequence:

>876_bases
GTGAATAAATTGCATACGTATAAGCGCATTACATTGTTGATAACTGTGTTGGCGCTTGCTCTTATAACAGCTGCATGCAG
CACAGCTCAAAATAAGGCTGAAAACAAAAAAACGGCCTGGGATGAGATAAAGGAAAAAGGGAAGATCGTGGTAGCGACTT
CAGGAACCCTTTACCCCACTTCATATCATGACACTGATTCCGGCAAGGACAAGCTGACCGGCTACGAAGTTGAAGTCATC
CGTGAAGCGGCTGAACGGCTCGACCTGGATGTCGAATTTAAAGAAATGGGCTTTGACGGCATGCTGACTGCGGTGGGGAG
CGGACAAGTAGACGCTGCCGCCAACGATATTACGATGACAGACGACCGCAAAGAAAAGTTTTTGTTCTCTACGCCTTATA
AATATTCATTCGGAACGGCTATCGTCCGCAAAAAAGACTTATCAGGCATCCACACGCTTGAGGACTTAAAAGGAAAGAAA
GCCGCTGGTGCAGCTACGACAGTTTACATGGATATCGCACGCAAATACGGAGCAGAGGAAGTCATTTACGACAACGCGAC
AAATGATCAATTTTTAAAGGATGTAGCGAATGGAAGAACCGACGTCATCTTAAACGACTACTACCTTCAAAAGCTCGCGC
TCGCCGCAATGCCTGATCTGGATCTGACAATTCATCCCGATCTTAAATACTATCCGCATCAGCAAGGCATGATCATGAAA
AAAGGAAACACTGAACTTAAAAAACAATTCGACAAAACGATTGATGAAATGCTGAAGGACGGCACAATCAAAAAGATTTC
GAAAAAGTTTTTCGGCGGTGCCGATGTTTCGAAAAAGCAGGATATCGACTATATCGATGTCGATGTGAATAAATAG

Upstream 100 bases:

>100_bases
TCAATCATTTTATTTTTTCCCAATACTAATTATCTTATTGCCTAATCCCTACTTCAGTGCTATGGTTTACTTGACTAAAG
GAATAGGAGGATTGTTTTAA

Downstream 100 bases:

>100_bases
AGGGATTTAAATTGGGCTCTATTCAATGGGAGTATATTTTTAATGCAGAATTGGCTGCGAAATCGTTTCCTTATGTGATG
CAAGGCATATGGAATACGCT

Product: YckB

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MNKLHTYKRITLLITVLALALITAACSTAQNKAENKKTAWDEIKEKGKIVVATSGTLYPTSYHDTDSGKDKLTGYEVEVI
REAAERLDLDVEFKEMGFDGMLTAVGSGQVDAAANDITMTDDRKEKFLFSTPYKYSFGTAIVRKKDLSGIHTLEDLKGKK
AAGAATTVYMDIARKYGAEEVIYDNATNDQFLKDVANGRTDVILNDYYLQKLALAAMPDLDLTIHPDLKYYPHQQGMIMK
KGNTELKKQFDKTIDEMLKDGTIKKISKKFFGGADVSKKQDIDYIDVDVNK

Sequences:

>Translated_291_residues
MNKLHTYKRITLLITVLALALITAACSTAQNKAENKKTAWDEIKEKGKIVVATSGTLYPTSYHDTDSGKDKLTGYEVEVI
REAAERLDLDVEFKEMGFDGMLTAVGSGQVDAAANDITMTDDRKEKFLFSTPYKYSFGTAIVRKKDLSGIHTLEDLKGKK
AAGAATTVYMDIARKYGAEEVIYDNATNDQFLKDVANGRTDVILNDYYLQKLALAAMPDLDLTIHPDLKYYPHQQGMIMK
KGNTELKKQFDKTIDEMLKDGTIKKISKKFFGGADVSKKQDIDYIDVDVNK
>Mature_291_residues
MNKLHTYKRITLLITVLALALITAACSTAQNKAENKKTAWDEIKEKGKIVVATSGTLYPTSYHDTDSGKDKLTGYEVEVI
REAAERLDLDVEFKEMGFDGMLTAVGSGQVDAAANDITMTDDRKEKFLFSTPYKYSFGTAIVRKKDLSGIHTLEDLKGKK
AAGAATTVYMDIARKYGAEEVIYDNATNDQFLKDVANGRTDVILNDYYLQKLALAAMPDLDLTIHPDLKYYPHQQGMIMK
KGNTELKKQFDKTIDEMLKDGTIKKISKKFFGGADVSKKQDIDYIDVDVNK

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=270, Percent_Identity=35.1851851851852, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787031, Length=267, Percent_Identity=26.2172284644195, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788649, Length=266, Percent_Identity=25.187969924812, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787088, Length=228, Percent_Identity=25.8771929824561, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787085, Length=228, Percent_Identity=24.1228070175439, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788648, Length=232, Percent_Identity=23.7068965517241, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015683
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 32498; Mature: 32498

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLHTYKRITLLITVLALALITAACSTAQNKAENKKTAWDEIKEKGKIVVATSGTLYPT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCEECCC
SYHDTDSGKDKLTGYEVEVIREAAERLDLDVEFKEMGFDGMLTAVGSGQVDAAANDITMT
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHCCCCCEEEECCCCCCCCCCCCCEEC
DDRKEKFLFSTPYKYSFGTAIVRKKDLSGIHTLEDLKGKKAAGAATTVYMDIARKYGAEE
CCCCCCEEEECCCCCCCCHHHEEHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCE
VIYDNATNDQFLKDVANGRTDVILNDYYLQKLALAAMPDLDLTIHPDLKYYPHQQGMIMK
EEECCCCCHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEE
KGNTELKKQFDKTIDEMLKDGTIKKISKKFFGGADVSKKQDIDYIDVDVNK
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNKLHTYKRITLLITVLALALITAACSTAQNKAENKKTAWDEIKEKGKIVVATSGTLYPT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCEECCC
SYHDTDSGKDKLTGYEVEVIREAAERLDLDVEFKEMGFDGMLTAVGSGQVDAAANDITMT
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEHHHCCCCCEEEECCCCCCCCCCCCCEEC
DDRKEKFLFSTPYKYSFGTAIVRKKDLSGIHTLEDLKGKKAAGAATTVYMDIARKYGAEE
CCCCCCEEEECCCCCCCCHHHEEHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCE
VIYDNATNDQFLKDVANGRTDVILNDYYLQKLALAAMPDLDLTIHPDLKYYPHQQGMIMK
EEECCCCCHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEE
KGNTELKKQFDKTIDEMLKDGTIKKISKKFFGGADVSKKQDIDYIDVDVNK
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 9384377 [H]