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The map label for this gene is yckA [H]

Identifier: 52784205

GI number: 52784205

Start: 360247

End: 360930

Strand: Reverse

Name: yckA [H]

Synonym: BLi00383

Alternate gene names: 52784205

Gene position: 360930-360247 (Counterclockwise)

Preceding gene: 52784206

Following gene: 52784204

Centisome position: 8.55

GC content: 48.1

Gene sequence:

>684_bases
TTGGGCTCTATTCAATGGGAGTATATTTTTAATGCAGAATTGGCTGCGAAATCGTTTCCTTATGTGATGCAAGGCATATG
GAATACGCTTTTCATTTCTTTTGCGAGCATGTTTGCCGGTTTAATTCTCGGTTTTTTCATCGCGCTTGGGCGCATGTCCG
GGCTCGCTTTGCTTCGTTGGCCGGCAAGAATCTATATCTCGTTTATGAGAGGCGTTCCGATCCTTGTCATACTATTTATC
CTTTATTTCGGTTTTCCTTATATCGGAATCCAATTTACGGCTTTGGCTGCTGCCTTAATCGGCTTCAGCATCAACAGCGC
CGCATACATTGCCGAGATTATCCGCTCGGCCCTGTCGTCCGTTGACAGAGGGCAGTGGGACGCTGCAAAATCGGTCGGAT
TCTCCTACTGGCAGACGATGCGCCACGTGATTGTCCCTCAATCGGTTAGGATTGCGCTCCCGCCTCTTGCGAACGTGATG
CTTGATCTCGTTAAAGCGTCTTCCCTGGCCGCCATGATCACCGTGCCTGAATTGTTTCAGCAGGCAAAAATCGTCGGCGG
ACGGGAATTCGACTATATGACGATGTACATTTTAGTTGCCTTGATTTACTGGGCCATTTGCTCGGGGATCGCTTTGCTCC
AGGATTTCCTGGAAAAGCGGACAGAGGTTTATATCAAAAAATAA

Upstream 100 bases:

>100_bases
TCAAAAAGATTTCGAAAAAGTTTTTCGGCGGTGCCGATGTTTCGAAAAAGCAGGATATCGACTATATCGATGTCGATGTG
AATAAATAGAGGGATTTAAA

Downstream 100 bases:

>100_bases
TATGAAGCTGCCGGGTACTCCGGCGGCTTACTATACTGTGAAACGGAGGCGGTATTATTCATTTCCTCAGATCAACTCAT
TTTCACGCAGAAAACCTTTA

Product: YckA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MGSIQWEYIFNAELAAKSFPYVMQGIWNTLFISFASMFAGLILGFFIALGRMSGLALLRWPARIYISFMRGVPILVILFI
LYFGFPYIGIQFTALAAALIGFSINSAAYIAEIIRSALSSVDRGQWDAAKSVGFSYWQTMRHVIVPQSVRIALPPLANVM
LDLVKASSLAAMITVPELFQQAKIVGGREFDYMTMYILVALIYWAICSGIALLQDFLEKRTEVYIKK

Sequences:

>Translated_227_residues
MGSIQWEYIFNAELAAKSFPYVMQGIWNTLFISFASMFAGLILGFFIALGRMSGLALLRWPARIYISFMRGVPILVILFI
LYFGFPYIGIQFTALAAALIGFSINSAAYIAEIIRSALSSVDRGQWDAAKSVGFSYWQTMRHVIVPQSVRIALPPLANVM
LDLVKASSLAAMITVPELFQQAKIVGGREFDYMTMYILVALIYWAICSGIALLQDFLEKRTEVYIKK
>Mature_226_residues
GSIQWEYIFNAELAAKSFPYVMQGIWNTLFISFASMFAGLILGFFIALGRMSGLALLRWPARIYISFMRGVPILVILFIL
YFGFPYIGIQFTALAAALIGFSINSAAYIAEIIRSALSSVDRGQWDAAKSVGFSYWQTMRHVIVPQSVRIALPPLANVML
DLVKASSLAAMITVPELFQQAKIVGGREFDYMTMYILVALIYWAICSGIALLQDFLEKRTEVYIKK

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=47.1153846153846, Blast_Score=211, Evalue=3e-56,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=29.7297297297297, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI87082239, Length=198, Percent_Identity=34.3434343434343, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787030, Length=208, Percent_Identity=32.2115384615385, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788645, Length=216, Percent_Identity=28.7037037037037, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787086, Length=220, Percent_Identity=26.8181818181818, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787087, Length=223, Percent_Identity=28.2511210762332, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI48994930, Length=143, Percent_Identity=34.2657342657343, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=25.4545454545455, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1786874, Length=220, Percent_Identity=26.8181818181818, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25444; Mature: 25312

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSIQWEYIFNAELAAKSFPYVMQGIWNTLFISFASMFAGLILGFFIALGRMSGLALLRW
CCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
PARIYISFMRGVPILVILFILYFGFPYIGIQFTALAAALIGFSINSAAYIAEIIRSALSS
HHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VDRGQWDAAKSVGFSYWQTMRHVIVPQSVRIALPPLANVMLDLVKASSLAAMITVPELFQ
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
QAKIVGGREFDYMTMYILVALIYWAICSGIALLQDFLEKRTEVYIKK
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GSIQWEYIFNAELAAKSFPYVMQGIWNTLFISFASMFAGLILGFFIALGRMSGLALLRW
CCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
PARIYISFMRGVPILVILFILYFGFPYIGIQFTALAAALIGFSINSAAYIAEIIRSALSS
HHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
VDRGQWDAAKSVGFSYWQTMRHVIVPQSVRIALPPLANVMLDLVKASSLAAMITVPELFQ
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
QAKIVGGREFDYMTMYILVALIYWAICSGIALLQDFLEKRTEVYIKK
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]