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The map label for this gene is yazC [H]

Identifier: 52783951

GI number: 52783951

Start: 113613

End: 114029

Strand: Direct

Name: yazC [H]

Synonym: BLi00113

Alternate gene names: 52783951

Gene position: 113613-114029 (Clockwise)

Preceding gene: 52783950

Following gene: 52783952

Centisome position: 2.69

GC content: 48.92

Gene sequence:

>417_bases
ATGAATTTGGAAACCATTAAAGACGCCAAACAGCTGAATGGTTTGGCGCTTGCTTACATGGGTGATGCCGTTTTGGAGGT
ATATGTGAGGCATCACCTCTTAAAGCAAGGCATGACAAGGCCCAATGATCTGCACCGGCAGTCGAGGCGATATGTCTCCG
CCAAGTCGCAGGCAAGCATGCTGTTTGCGCTTGAGGAGCAGGAATTTTTCACCGAGGAAGAACAGGCTGTGCTGAGAAGA
GGGCGGAATGCCAAATCCGGAACGGTACCGAAAAACACGGATGTCCAAACATATCGTTACAGTACGGCTTTTGAGGCGGT
CATCGGGTATCTTTTTCTTGAGAACAGGGAAGATAGGCTTAATGAACTCATCAAAGCAGCGCTGGAAAAACGGGATGGCA
GGGAGGAAGTAAAATGA

Upstream 100 bases:

>100_bases
TTGCAACATCTGATCAGATTCGCGACCAGTTGAAAAGCATGAATATTATCTTGGAGGACACTCCGCAGGGCACGCGCTGG
AAAAGAGGAGAATCATAAAC

Downstream 100 bases:

>100_bases
GTCAGCAGCATGATTACGTCATAGGAAAAAACGCGGTCATCGAAACATTAAAGTCCGGCCGGGAATTGTATAAGCTGTGG
ATGGCGGAAAACACAGTGAA

Product: YazC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNLETIKDAKQLNGLALAYMGDAVLEVYVRHHLLKQGMTRPNDLHRQSRRYVSAKSQASMLFALEEQEFFTEEEQAVLRR
GRNAKSGTVPKNTDVQTYRYSTAFEAVIGYLFLENREDRLNELIKAALEKRDGREEVK

Sequences:

>Translated_138_residues
MNLETIKDAKQLNGLALAYMGDAVLEVYVRHHLLKQGMTRPNDLHRQSRRYVSAKSQASMLFALEEQEFFTEEEQAVLRR
GRNAKSGTVPKNTDVQTYRYSTAFEAVIGYLFLENREDRLNELIKAALEKRDGREEVK
>Mature_138_residues
MNLETIKDAKQLNGLALAYMGDAVLEVYVRHHLLKQGMTRPNDLHRQSRRYVSAKSQASMLFALEEQEFFTEEEQAVLRR
GRNAKSGTVPKNTDVQTYRYSTAFEAVIGYLFLENREDRLNELIKAALEKRDGREEVK

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15966; Mature: 15966

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLETIKDAKQLNGLALAYMGDAVLEVYVRHHLLKQGMTRPNDLHRQSRRYVSAKSQASM
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LFALEEQEFFTEEEQAVLRRGRNAKSGTVPKNTDVQTYRYSTAFEAVIGYLFLENREDRL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
NELIKAALEKRDGREEVK
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNLETIKDAKQLNGLALAYMGDAVLEVYVRHHLLKQGMTRPNDLHRQSRRYVSAKSQASM
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LFALEEQEFFTEEEQAVLRRGRNAKSGTVPKNTDVQTYRYSTAFEAVIGYLFLENREDRL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
NELIKAALEKRDGREEVK
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]