Click here to switch to the map view.

The map label for this gene is yabA

Identifier: 52783890

GI number: 52783890

Start: 46768

End: 47130

Strand: Direct

Name: yabA

Synonym: BLi00046

Alternate gene names: NA

Gene position: 46768-47130 (Clockwise)

Preceding gene: 52783889

Following gene: 52783891

Centisome position: 1.11

GC content: 40.5

Gene sequence:

>363_bases
TTGGATAAAAAAGAATTGTTTGATACAGTGATAAGTTTAGAAGAACAAATCGGGTCCCTTTACCGCCAGCTTGGAGATCT
CAAGCAGCATATCGGGGAAATGATTGAAGAAAACAATCATTTACAGCTTGAAAACGAGCATTTGCGCAAGAGGCTGGAAG
AGACGGATCAAAGGCTAAAAAGCGTAAAATCCGATGAAAAAGAGATAAAAGCAGAAAAGACAGGGCATGCTGATATTGGA
GAGGGCCATGATAATTTGGCTCGCCTGTATCAGGAGGGCTTCCATATTTGCAACATCCATTACGGAAGTGTTCGCAAAGA
AGGAGACTGTCTGTTCTGCCTCTCGTTTTTAAATAAAAAATAA

Upstream 100 bases:

>100_bases
AACTGACAGACTGCGACAAAGTTGTTGAATATACGTGGGATGAGCTGTTGCAAGAAGGTGTCGTATCTGCACAAACCACA
GATTAACGAGGTGTGAAACC

Downstream 100 bases:

>100_bases
GAAAGGCTTCCGGCGGAACGGAAGCCTTTTTAACGGTACAATGTGTTTAGGAAAGGGAAAAGACATGATTCAATTAAAAG
ATGATGAACGACTGGATTAT

Product: DNA replication intiation control protein YabA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MDKKELFDTVISLEEQIGSLYRQLGDLKQHIGEMIEENNHLQLENEHLRKRLEETDQRLKSVKSDEKEIKAEKTGHADIG
EGHDNLARLYQEGFHICNIHYGSVRKEGDCLFCLSFLNKK

Sequences:

>Translated_120_residues
MDKKELFDTVISLEEQIGSLYRQLGDLKQHIGEMIEENNHLQLENEHLRKRLEETDQRLKSVKSDEKEIKAEKTGHADIG
EGHDNLARLYQEGFHICNIHYGSVRKEGDCLFCLSFLNKK
>Mature_120_residues
MDKKELFDTVISLEEQIGSLYRQLGDLKQHIGEMIEENNHLQLENEHLRKRLEETDQRLKSVKSDEKEIKAEKTGHADIG
EGHDNLARLYQEGFHICNIHYGSVRKEGDCLFCLSFLNKK

Specific function: Involved in initiation control of chromosome replication

COG id: COG4467

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yabA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YABA_BACLD (Q65PI8)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_077319.1
- RefSeq:   YP_089719.1
- STRING:   Q65PI8
- EnsemblBacteria:   EBBACT00000057297
- EnsemblBacteria:   EBBACT00000059679
- GeneID:   3029312
- GeneID:   3100054
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi00046
- KEGG:   bli:BL00538
- NMPDR:   fig|279010.5.peg.1328
- eggNOG:   COG4467
- GeneTree:   EBGT00050000002880
- HOGENOM:   HBG514867
- OMA:   VHYGSVR
- ProtClustDB:   PRK13169
- BioCyc:   BLIC279010-1:BLI00046-MONOMER
- BioCyc:   BLIC279010:BL00538-MONOMER
- HAMAP:   MF_01159
- InterPro:   IPR010377
- PIRSF:   PIRSF021439

Pfam domain/function: PF06156 DUF972

EC number: NA

Molecular weight: Translated: 13996; Mature: 13996

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKELFDTVISLEEQIGSLYRQLGDLKQHIGEMIEENNHLQLENEHLRKRLEETDQRLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHH
SVKSDEKEIKAEKTGHADIGEGHDNLARLYQEGFHICNIHYGSVRKEGDCLFCLSFLNKK
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MDKKELFDTVISLEEQIGSLYRQLGDLKQHIGEMIEENNHLQLENEHLRKRLEETDQRLK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHH
SVKSDEKEIKAEKTGHADIGEGHDNLARLYQEGFHICNIHYGSVRKEGDCLFCLSFLNKK
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA