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The map label for this gene is yabB [H]

Identifier: 52783891

GI number: 52783891

Start: 47195

End: 47938

Strand: Direct

Name: yabB [H]

Synonym: BLi00047

Alternate gene names: 52783891

Gene position: 47195-47938 (Clockwise)

Preceding gene: 52783890

Following gene: 52783892

Centisome position: 1.12

GC content: 44.35

Gene sequence:

>744_bases
ATGATTCAATTAAAAGATGATGAACGACTGGATTATTTACTGGCGGAAGATATGAAAATCGTGCAAAGCCCGACAGTTTT
TGCATTTTCCTTAGATGCTGTTCTGCTGTCGAAATTTGCTTACGTTCCGATACAAAAAGGAAACATCATTGATTTGTGCA
CAGGGAACGGGATTGTTCCGCTGCTTCTCAGCACCCGCACAAAAGCCGCCATCACCGGGGTGGAAATTCAGGAAAGGCTG
TATGACATGGCCCTCCGCAGCGTGGAATACAACAACCTGCAAAAACAGATTCATCTTATCAGGGACGACCTGAAAAATAT
GCCGCAGGTGCTCGGATACAATAAGGCCGATGTCGTCACATGCAATCCTCCTTATTTCAAGACGCCGCAAAAAACGGAGC
AAAACCTAAATGAACATTTGGCCATTGCCAGACATGAAATCTACTGCACGCTTGAAGATGTTATTCGCGTCAGCAGCAAG
CTATTAAAGCAGGGCGGCAAACTCGCTCTCGTTCACCGGCCGGGGAGGCTGCTCGAAATCTTTGAATTGATGAAGGCCTT
TCAAATCGAGCCGAAGCGGGTCCAATTTGTTTACCCGAAAAAAAGCAAAGAAGCCAACACCATTTTAGTAGAAGGAATAA
AAGACGGCCGACCTGACCTGAAAATTTTGCCTCCTTTGTTTGTGTATGATGAACAAGATCAATATACACATGAAATAAGG
AAGATTTTATATGGAGACGAATAG

Upstream 100 bases:

>100_bases
TGTCTGTTCTGCCTCTCGTTTTTAAATAAAAAATAAGAAAGGCTTCCGGCGGAACGGAAGCCTTTTTAACGGTACAATGT
GTTTAGGAAAGGGAAAAGAC

Downstream 100 bases:

>100_bases
CCATTACTTTTACGTGCTTTCGTGCCGGGACGGCAGCTTGTACGCAGGCTATACAAACAATATCGAAAAGCGCCTGAAAA
CGCATAATGACGGGAAGGGC

Product: YabB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MIQLKDDERLDYLLAEDMKIVQSPTVFAFSLDAVLLSKFAYVPIQKGNIIDLCTGNGIVPLLLSTRTKAAITGVEIQERL
YDMALRSVEYNNLQKQIHLIRDDLKNMPQVLGYNKADVVTCNPPYFKTPQKTEQNLNEHLAIARHEIYCTLEDVIRVSSK
LLKQGGKLALVHRPGRLLEIFELMKAFQIEPKRVQFVYPKKSKEANTILVEGIKDGRPDLKILPPLFVYDEQDQYTHEIR
KILYGDE

Sequences:

>Translated_247_residues
MIQLKDDERLDYLLAEDMKIVQSPTVFAFSLDAVLLSKFAYVPIQKGNIIDLCTGNGIVPLLLSTRTKAAITGVEIQERL
YDMALRSVEYNNLQKQIHLIRDDLKNMPQVLGYNKADVVTCNPPYFKTPQKTEQNLNEHLAIARHEIYCTLEDVIRVSSK
LLKQGGKLALVHRPGRLLEIFELMKAFQIEPKRVQFVYPKKSKEANTILVEGIKDGRPDLKILPPLFVYDEQDQYTHEIR
KILYGDE
>Mature_247_residues
MIQLKDDERLDYLLAEDMKIVQSPTVFAFSLDAVLLSKFAYVPIQKGNIIDLCTGNGIVPLLLSTRTKAAITGVEIQERL
YDMALRSVEYNNLQKQIHLIRDDLKNMPQVLGYNKADVVTCNPPYFKTPQKTEQNLNEHLAIARHEIYCTLEDVIRVSSK
LLKQGGKLALVHRPGRLLEIFELMKAFQIEPKRVQFVYPKKSKEANTILVEGIKDGRPDLKILPPLFVYDEQDQYTHEIR
KILYGDE

Specific function: Unknown

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 28371; Mature: 28371

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLKDDERLDYLLAEDMKIVQSPTVFAFSLDAVLLSKFAYVPIQKGNIIDLCTGNGIVP
CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCEECCCCEEEEECCCCEEE
LLLSTRTKAAITGVEIQERLYDMALRSVEYNNLQKQIHLIRDDLKNMPQVLGYNKADVVT
EEECCCCHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEE
CNPPYFKTPQKTEQNLNEHLAIARHEIYCTLEDVIRVSSKLLKQGGKLALVHRPGRLLEI
CCCCCCCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
FELMKAFQIEPKRVQFVYPKKSKEANTILVEGIKDGRPDLKILPPLFVYDEQDQYTHEIR
HHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCEECCCEEEECCCHHHHHHHH
KILYGDE
HHHCCCC
>Mature Secondary Structure
MIQLKDDERLDYLLAEDMKIVQSPTVFAFSLDAVLLSKFAYVPIQKGNIIDLCTGNGIVP
CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCEECCCCEEEEECCCCEEE
LLLSTRTKAAITGVEIQERLYDMALRSVEYNNLQKQIHLIRDDLKNMPQVLGYNKADVVT
EEECCCCHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEE
CNPPYFKTPQKTEQNLNEHLAIARHEIYCTLEDVIRVSSKLLKQGGKLALVHRPGRLLEI
CCCCCCCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
FELMKAFQIEPKRVQFVYPKKSKEANTILVEGIKDGRPDLKILPPLFVYDEQDQYTHEIR
HHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCEECCCEEEECCCHHHHHHHH
KILYGDE
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]