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The map label for this gene is ykfC [H]

Identifier: 51893864

GI number: 51893864

Start: 2925725

End: 2926987

Strand: Reverse

Name: ykfC [H]

Synonym: STH2726

Alternate gene names: 51893864

Gene position: 2926987-2925725 (Counterclockwise)

Preceding gene: 51893866

Following gene: 51893862

Centisome position: 82.08

GC content: 64.45

Gene sequence:

>1263_bases
ATGCTGGCCGCCCTGAAACGGGTGGAGCGGAACGGAGGCGCCCCAGGCGAGGACGGTGTCCCCACCGAACGGCTGCGGGA
CCAGATCCGCTCGGAGTGGGAGCGCATCCGTGAGGAACTGCTCCGGGGGACCTACAGACCGCAGCCAGTCCGCCGGGTCG
AAATCCCGAAACCGGGCGGCGGCAAGCGGATGTTGGGTATTCCCACCGTGATGGACCGCCTGATCCAGCAGGCACTCCTG
CAAGTACTGACGCCGATCTTTGACCCGACATTCTCCGAATCCAGCTACGGCTTTCGGCCGGGGCGGCGGGGTCATGATGC
GGTCAGGAAGGCACGTCAGTACGTGGAGGAAGGGTACGACTGGGTCGTGGACATGGACCTGGAGAAGTTCTTCGACCGGG
TCAACCACGACGTGCTGATGGCCCGCGTGGCGCGGCGGGTAACGGATAAGCGTGTGCTGCGGCTGATCCGGCGGTACTTA
CAGGCCGGGGTCATGCTGAACGGGGTAGTCGTGGCGACGGAGGAAGGGACGCCGCAGGGCGGTCCGCTGAGTCCGCTGCT
GGCGAACATCCTGCTGGATGACCTCGACAAGGAGCTGGAGCGCCGTGGCCACCACTTTGTCCGGTACGCCGATGACTGCA
ACATCTACGTCCGCAGCAAGCGGGCGGGAGAACGGGTCTACAGGAGCGTGCGCCACTTCCTGCAGGAGCGGTTACGGCTG
AAGGTCAACGAGGAGAAGAGCGCAGTGGACCGGCCGTGGAAGCGGCAGTTCCTCGGGTTTAGCTTCTACAAGCACCGGGG
AGTGCGCATCCGGCTGGCCCCGAAGAGCCTGAAGCGCGTGAAGGACAAGCTCCGCACGCTGACGGACCGCAACCGCAGCC
AGAGCATGGAGGACCGAATCCGGCGCCTGAATGCTTACTTGCGGGGCTGGGTTGGGTACTATGCGCTCTCCGATGCCAGG
TCAGCCTTTGAAAGACTCGAAGGATGGCTGAAGCGTCGGCTGCGAGCATGCGTATGGAAGCAGTGGAAGCGTGTACGCAC
GCGCTTTCGGGAGTTGCGCGCCCTCGGTTTGCCCGAATGGGTAGTCCACCAACTCGCCAACAGCCGCAAAGGCCCGTGGC
GGATGGCAGGTGGCCCACTAAACAGCGCCCTGGGCGACGCCTACTGGCGTGCCCAGGGGCTGATAAGCCTGACCGAATGT
TATGAAGCGACTCGTCAATCCTGGCGAACCGCCGGATGCGGACCCGCATGTCCGGTGGTGTGA

Upstream 100 bases:

>100_bases
GTGAATCGCCTTGTCACGGGCTTGGCAACGACTTCCGGGTCCGGCGCATGCGTCTGCTCGTCGATCCCACCGGCAGCACC
AGGTGGTGGCCAGGGAGAAC

Downstream 100 bases:

>100_bases
GAGGACGGGGGCTAGCCGCCCCCTCCTACTCGATCGATCGCATCCACTGTTGTGTTATGCCACCCGATCCGCCGCACGGC
CGAGCAGGAAGGGCTCCAGC

Product: group II intron-encoding maturase, N-terminally truncated

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MLAALKRVERNGGAPGEDGVPTERLRDQIRSEWERIREELLRGTYRPQPVRRVEIPKPGGGKRMLGIPTVMDRLIQQALL
QVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYL
QAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFLQERLRL
KVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQSMEDRIRRLNAYLRGWVGYYALSDAR
SAFERLEGWLKRRLRACVWKQWKRVRTRFRELRALGLPEWVVHQLANSRKGPWRMAGGPLNSALGDAYWRAQGLISLTEC
YEATRQSWRTAGCGPACPVV

Sequences:

>Translated_420_residues
MLAALKRVERNGGAPGEDGVPTERLRDQIRSEWERIREELLRGTYRPQPVRRVEIPKPGGGKRMLGIPTVMDRLIQQALL
QVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYL
QAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFLQERLRL
KVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQSMEDRIRRLNAYLRGWVGYYALSDAR
SAFERLEGWLKRRLRACVWKQWKRVRTRFRELRALGLPEWVVHQLANSRKGPWRMAGGPLNSALGDAYWRAQGLISLTEC
YEATRQSWRTAGCGPACPVV
>Mature_420_residues
MLAALKRVERNGGAPGEDGVPTERLRDQIRSEWERIREELLRGTYRPQPVRRVEIPKPGGGKRMLGIPTVMDRLIQQALL
QVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYL
QAGVMLNGVVVATEEGTPQGGPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFLQERLRL
KVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQSMEDRIRRLNAYLRGWVGYYALSDAR
SAFERLEGWLKRRLRACVWKQWKRVRTRFRELRALGLPEWVVHQLANSRKGPWRMAGGPLNSALGDAYWRAQGLISLTEC
YEATRQSWRTAGCGPACPVV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=249, Percent_Identity=29.3172690763052, Blast_Score=120, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=337, Percent_Identity=27.299703264095, Blast_Score=110, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 48973; Mature: 48973

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAALKRVERNGGAPGEDGVPTERLRDQIRSEWERIREELLRGTYRPQPVRRVEIPKPGG
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC
GKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYD
CCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
WVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVVATEEGTPQG
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEECCCCCCC
GPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFLQERLRL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHC
KVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQSMEDRI
CCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHH
RRLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWKQWKRVRTRFRELRALGLPEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
VVHQLANSRKGPWRMAGGPLNSALGDAYWRAQGLISLTECYEATRQSWRTAGCGPACPVV
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLAALKRVERNGGAPGEDGVPTERLRDQIRSEWERIREELLRGTYRPQPVRRVEIPKPGG
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC
GKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRKARQYVEEGYD
CCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
WVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVMLNGVVVATEEGTPQG
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEECCCCCCC
GPLSPLLANILLDDLDKELERRGHHFVRYADDCNIYVRSKRAGERVYRSVRHFLQERLRL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHC
KVNEEKSAVDRPWKRQFLGFSFYKHRGVRIRLAPKSLKRVKDKLRTLTDRNRSQSMEDRI
CCCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHH
RRLNAYLRGWVGYYALSDARSAFERLEGWLKRRLRACVWKQWKRVRTRFRELRALGLPEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
VVHQLANSRKGPWRMAGGPLNSALGDAYWRAQGLISLTECYEATRQSWRTAGCGPACPVV
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]