| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893847
Identifier: 51893847
GI number: 51893847
Start: 2905997
End: 2907205
Strand: Reverse
Name: 51893847
Synonym: STH2709
Alternate gene names: NA
Gene position: 2907205-2905997 (Counterclockwise)
Preceding gene: 51893848
Following gene: 51893846
Centisome position: 81.52
GC content: 52.52
Gene sequence:
>1209_bases ATGGCGGTTGGCAAAGTTCTCCTCGTTTCTTCACGCAATTTATATACTGCCAACGGGGAGTGGCGGTTGGTTTCTAGTCG AGCCTCGACGTTGAGTAAAGCGTTCGGGATAGAAACCGATGCCTTAGCGCTGATCAGGAGCCATCATGTCAAGAATGGTC CAAGAGCACCGCAACTACCTGGGTTTAATTGTGAATATGTGTATTGTAACAGTTGGGGCAACCTTCCGGAATCCATGCGG CGGTTATTGGGGGAAGTGAAGCGAAGATTAAGAACAACCCAGTATCGGGGTGTGATATTGTCTGGGGATCTAGTATATCC GCTACTACCGTGGCTACCGGTCGAAAGAACGTTGATTGACCTTCACGGCGTCCCGGAAGAATGGGTGGAGTACCCAAATC CACGTTTGGGTCCTGCTTGGTTTAGAAAGGCTTTGTTTCATGCAGCCATACGCCTCCATCAGTGGGCGGTTCCTCGTACA GCTGGGGTTCTAACCGTTACCAACGAACTCGCGGAGTTGTCAGTCGAACGGTACGGGGCACGGTCTACTTATGTGGTCCC ATGTGTAGGGTCGCACTTGGTGGTAGAAGACCCACCTGTGATCCGACAGAGGTGGCGCCAGCGTCTAGGCATCGGGAACA GTGAACTTGCGTTTGTCTACAGTGGTGGACTTTCTCCGTGGCAACTATTTGATGAAACAATCGCGTGTTATCGGGTGTGG CGTCAACACCTGGGCAGTGCTTGCCGGCTGGTATTGTTTACTCCGGATCCCGAGAGATCGTTAGCGCGCGTTGTCGATTC GGGTGTCCCGAGCGACGAGGTTGTGAGTATGTCGCTGCTTCCGGAAGAAGTCGTTCCAGCTCTTCACGCTTGCGATGTGG GCTTTGTTCTGCGGGAGGACAACTGGACAAACCGGGTGGCATTTCCGAACAAGTTCGCTGAGTACTGTGCTGCAGGGCTC CTTATTGTGACAAGTCCCGGGCTGCGAGCTGCGGCGGATGTGGTGGTAACGAAGGGTATTGGCGTTCTGGTAGATCCACG AGAAATCGAACCTGCAGCGCTTTCGCAATACCCCGAATTAAGAGAGAAGATTTCCACTCGTGCTTCCAACTGGTCTGGTT ATTACGACGCGTGTCGATCTCTGGTAAACGAACGTTATTCTATGGAAAAGGCTCTACGACCGGTAGTGGATTTCTTTTTG GATGGCTGA
Upstream 100 bases:
>100_bases GTTTGATCGTTGGGTGGCGAACTCGTGTTCAACAAATTCAACATGTCCCTAGGGCGGGCGTGACATGGGACCTATCGTCG TGCAATTGGAGGCGAACCAT
Downstream 100 bases:
>100_bases TGGTTGTTAAACGTGCTTTTGTATTGTGACTCTAGCTGTGCCCAGTTGCCCTGGTTGGTTGGTATTTCACCAGCATTATG TTGTGTCGGTAATGAAGACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MAVGKVLLVSSRNLYTANGEWRLVSSRASTLSKAFGIETDALALIRSHHVKNGPRAPQLPGFNCEYVYCNSWGNLPESMR RLLGEVKRRLRTTQYRGVILSGDLVYPLLPWLPVERTLIDLHGVPEEWVEYPNPRLGPAWFRKALFHAAIRLHQWAVPRT AGVLTVTNELAELSVERYGARSTYVVPCVGSHLVVEDPPVIRQRWRQRLGIGNSELAFVYSGGLSPWQLFDETIACYRVW RQHLGSACRLVLFTPDPERSLARVVDSGVPSDEVVSMSLLPEEVVPALHACDVGFVLREDNWTNRVAFPNKFAEYCAAGL LIVTSPGLRAAADVVVTKGIGVLVDPREIEPAALSQYPELREKISTRASNWSGYYDACRSLVNERYSMEKALRPVVDFFL DG
Sequences:
>Translated_402_residues MAVGKVLLVSSRNLYTANGEWRLVSSRASTLSKAFGIETDALALIRSHHVKNGPRAPQLPGFNCEYVYCNSWGNLPESMR RLLGEVKRRLRTTQYRGVILSGDLVYPLLPWLPVERTLIDLHGVPEEWVEYPNPRLGPAWFRKALFHAAIRLHQWAVPRT AGVLTVTNELAELSVERYGARSTYVVPCVGSHLVVEDPPVIRQRWRQRLGIGNSELAFVYSGGLSPWQLFDETIACYRVW RQHLGSACRLVLFTPDPERSLARVVDSGVPSDEVVSMSLLPEEVVPALHACDVGFVLREDNWTNRVAFPNKFAEYCAAGL LIVTSPGLRAAADVVVTKGIGVLVDPREIEPAALSQYPELREKISTRASNWSGYYDACRSLVNERYSMEKALRPVVDFFL DG >Mature_401_residues AVGKVLLVSSRNLYTANGEWRLVSSRASTLSKAFGIETDALALIRSHHVKNGPRAPQLPGFNCEYVYCNSWGNLPESMRR LLGEVKRRLRTTQYRGVILSGDLVYPLLPWLPVERTLIDLHGVPEEWVEYPNPRLGPAWFRKALFHAAIRLHQWAVPRTA GVLTVTNELAELSVERYGARSTYVVPCVGSHLVVEDPPVIRQRWRQRLGIGNSELAFVYSGGLSPWQLFDETIACYRVWR QHLGSACRLVLFTPDPERSLARVVDSGVPSDEVVSMSLLPEEVVPALHACDVGFVLREDNWTNRVAFPNKFAEYCAAGLL IVTSPGLRAAADVVVTKGIGVLVDPREIEPAALSQYPELREKISTRASNWSGYYDACRSLVNERYSMEKALRPVVDFFLD G
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45028; Mature: 44897
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVGKVLLVSSRNLYTANGEWRLVSSRASTLSKAFGIETDALALIRSHHVKNGPRAPQLP CCCCCEEEEECCCEEECCCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC GFNCEYVYCNSWGNLPESMRRLLGEVKRRLRTTQYRGVILSGDLVYPLLPWLPVERTLID CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHCCCCCCHHHHHH LHGVPEEWVEYPNPRLGPAWFRKALFHAAIRLHQWAVPRTAGVLTVTNELAELSVERYGA HCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCC RSTYVVPCVGSHLVVEDPPVIRQRWRQRLGIGNSELAFVYSGGLSPWQLFDETIACYRVW CCCEEEEECCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH RQHLGSACRLVLFTPDPERSLARVVDSGVPSDEVVSMSLLPEEVVPALHACDVGFVLRED HHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHHEEEHHCCCHHHHHHHHHCCCEEEEECC NWTNRVAFPNKFAEYCAAGLLIVTSPGLRAAADVVVTKGIGVLVDPREIEPAALSQYPEL CCCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHEECCCEEEECCCCCCHHHHHCCHHH REKISTRASNWSGYYDACRSLVNERYSMEKALRPVVDFFLDG HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AVGKVLLVSSRNLYTANGEWRLVSSRASTLSKAFGIETDALALIRSHHVKNGPRAPQLP CCCCEEEEECCCEEECCCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC GFNCEYVYCNSWGNLPESMRRLLGEVKRRLRTTQYRGVILSGDLVYPLLPWLPVERTLID CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHCCCCCCHHHHHH LHGVPEEWVEYPNPRLGPAWFRKALFHAAIRLHQWAVPRTAGVLTVTNELAELSVERYGA HCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCC RSTYVVPCVGSHLVVEDPPVIRQRWRQRLGIGNSELAFVYSGGLSPWQLFDETIACYRVW CCCEEEEECCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH RQHLGSACRLVLFTPDPERSLARVVDSGVPSDEVVSMSLLPEEVVPALHACDVGFVLRED HHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHHEEEHHCCCHHHHHHHHHCCCEEEEECC NWTNRVAFPNKFAEYCAAGLLIVTSPGLRAAADVVVTKGIGVLVDPREIEPAALSQYPEL CCCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHEECCCEEEECCCCCCHHHHHCCHHH REKISTRASNWSGYYDACRSLVNERYSMEKALRPVVDFFLDG HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA