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The map label for this gene is ydgJ [C]

Identifier: 51893835

GI number: 51893835

Start: 2887545

End: 2888630

Strand: Reverse

Name: ydgJ [C]

Synonym: STH2697

Alternate gene names: 51893835

Gene position: 2888630-2887545 (Counterclockwise)

Preceding gene: 51893836

Following gene: 51893832

Centisome position: 81.0

GC content: 70.72

Gene sequence:

>1086_bases
ATGAAACCCTACCGCATCGGCATCGTAGGTTACAGCTTCGGACGCATCCACGCAGAGGCCTACCGCCAGATCCCGTTCTA
CCTGGACGTCGGCGCACCGATCGAGCTGGTGGGGGTCGCGACCAGCCGCCCCGAGACCGCCCGGCAGGCGCAGGCCGAGG
CCGGCTTCGCTCTTGCCACCGCCGACTGGCGCGAGCTCGTCGCCTCGCCCGATGTCGACATCATCCACGTCTGCACGCCG
GACGACCTGCACCACCCCATCGCCGCCGCAGCACTGGCGGCCGGCAAGCACGTCTACTGCGAGAAGCCCCTGGCCCGGAC
GGTGGCGGAGGCGGAGGACCTGTACGACAGGGCCCGGGCGTCGGGCCGGGTGGCCCAGATCGCCTTCCAGATGCGCTTCG
GCTCCGCCGTCCAGGCGGCGCGCCGCCTGATCCGGGACGGCACCCTGGGCGAGATCACCAGCTTTCGGCTCACCTTCCTG
CACTCGGGCTACGAGGACCCGGAGCGTCCCCTCACGTGGCGGCTGGACAGCGCACGCACCGGGGGCGGCGTGCTCTACGA
CCTGGGATCCCACGCCGTCGACCTGCTCACGTTCCTGCTGGGCCGTCCCCGCCGGGTGATGGGCCTCACCCGGACCTTCA
TCAAGGAGCGGCCTGTGGCGACAGGCAGCGACCGGAAGGCGCCGGTGAAGGTCGACGACGTCGCCCTGGTGACGATGGAG
ATGGAGGCCGGCTGCGTCGGCGTGATGGAGGCGACCCGGCTCGCGACGGGGGTGCGCAGGGGGCCGGACCTGACGATCTA
CGGGACCCGGGGGTCGGTGGCCTTCAACGGGTTCACCAACCACAACGAGCTGAACCTCTACCTGAAGCAGGAGAAGGTGC
CCGGCCTCAGCGGGTGGGAGACCATCAACACCGGCGGCCGCAACCCGGTGCCGCTCAGCGTGGCCGCCCAGGCTGCGTTC
CTGACGGCCGTCCGGGATGGCCGGACGGATGCGGAGCCCAACTTTGCCACGGGCCTGCAGGTTCAGCGGGTGCTGGCAGC
GGTGCAGGAGTCGGCCCGGACGGGACAGTGGGTGTCCGTGGATTGA

Upstream 100 bases:

>100_bases
TCTGAAAAATGCGGCCGCCGGACTTTACGGGTCAGTTGCGCTGACGATCGGAGAAGTCTTACCTTTCGGTATGAGGGCGA
TCGAGAAGGGAGGATCCCCC

Downstream 100 bases:

>100_bases
AGAGCGTACGAGAGGCCCCGCCGATCCGGCGGGGCCCTTCTGACTTCGTATGGATGGTTCCTCCGGCCCCTGGCGGATCC
TTGGCTGTCTCCCAACCCCC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKPYRIGIVGYSFGRIHAEAYRQIPFYLDVGAPIELVGVATSRPETARQAQAEAGFALATADWRELVASPDVDIIHVCTP
DDLHHPIAAAALAAGKHVYCEKPLARTVAEAEDLYDRARASGRVAQIAFQMRFGSAVQAARRLIRDGTLGEITSFRLTFL
HSGYEDPERPLTWRLDSARTGGGVLYDLGSHAVDLLTFLLGRPRRVMGLTRTFIKERPVATGSDRKAPVKVDDVALVTME
MEAGCVGVMEATRLATGVRRGPDLTIYGTRGSVAFNGFTNHNELNLYLKQEKVPGLSGWETINTGGRNPVPLSVAAQAAF
LTAVRDGRTDAEPNFATGLQVQRVLAAVQESARTGQWVSVD

Sequences:

>Translated_361_residues
MKPYRIGIVGYSFGRIHAEAYRQIPFYLDVGAPIELVGVATSRPETARQAQAEAGFALATADWRELVASPDVDIIHVCTP
DDLHHPIAAAALAAGKHVYCEKPLARTVAEAEDLYDRARASGRVAQIAFQMRFGSAVQAARRLIRDGTLGEITSFRLTFL
HSGYEDPERPLTWRLDSARTGGGVLYDLGSHAVDLLTFLLGRPRRVMGLTRTFIKERPVATGSDRKAPVKVDDVALVTME
MEAGCVGVMEATRLATGVRRGPDLTIYGTRGSVAFNGFTNHNELNLYLKQEKVPGLSGWETINTGGRNPVPLSVAAQAAF
LTAVRDGRTDAEPNFATGLQVQRVLAAVQESARTGQWVSVD
>Mature_361_residues
MKPYRIGIVGYSFGRIHAEAYRQIPFYLDVGAPIELVGVATSRPETARQAQAEAGFALATADWRELVASPDVDIIHVCTP
DDLHHPIAAAALAAGKHVYCEKPLARTVAEAEDLYDRARASGRVAQIAFQMRFGSAVQAARRLIRDGTLGEITSFRLTFL
HSGYEDPERPLTWRLDSARTGGGVLYDLGSHAVDLLTFLLGRPRRVMGLTRTFIKERPVATGSDRKAPVKVDDVALVTME
MEAGCVGVMEATRLATGVRRGPDLTIYGTRGSVAFNGFTNHNELNLYLKQEKVPGLSGWETINTGGRNPVPLSVAAQAAF
LTAVRDGRTDAEPNFATGLQVQRVLAAVQESARTGQWVSVD

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI226371727, Length=335, Percent_Identity=25.9701492537313, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI9506675, Length=367, Percent_Identity=25.0681198910082, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI7657212, Length=174, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87081947, Length=223, Percent_Identity=30.9417040358744, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787574, Length=378, Percent_Identity=26.7195767195767, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082405, Length=226, Percent_Identity=27.4336283185841, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789848, Length=147, Percent_Identity=35.3741496598639, Blast_Score=83, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24581117, Length=255, Percent_Identity=28.2352941176471, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19920536, Length=313, Percent_Identity=26.1980830670927, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 39186; Mature: 39186

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYRIGIVGYSFGRIHAEAYRQIPFYLDVGAPIELVGVATSRPETARQAQAEAGFALAT
CCCEEEEEEEECHHHHHHHHHHCCCEEEECCCCEEEEEEECCCCHHHHHHHHHCCEEEEE
ADWRELVASPDVDIIHVCTPDDLHHPIAAAALAAGKHVYCEKPLARTVAEAEDLYDRARA
HHHHHHHCCCCCCEEEEECCCHHCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHC
SGRVAQIAFQMRFGSAVQAARRLIRDGTLGEITSFRLTFLHSGYEDPERPLTWRLDSART
CCCEEEEEEHHHHCHHHHHHHHHHHCCCCCHHHHEEEEEEECCCCCCCCCEEEEECCCCC
GGGVLYDLGSHAVDLLTFLLGRPRRVMGLTRTFIKERPVATGSDRKAPVKVDDVALVTME
CCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEEEEEE
MEAGCVGVMEATRLATGVRRGPDLTIYGTRGSVAFNGFTNHNELNLYLKQEKVPGLSGWE
CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCEEEEEEEECCCCCCCCCC
TINTGGRNPVPLSVAAQAAFLTAVRDGRTDAEPNFATGLQVQRVLAAVQESARTGQWVSV
EECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
D
C
>Mature Secondary Structure
MKPYRIGIVGYSFGRIHAEAYRQIPFYLDVGAPIELVGVATSRPETARQAQAEAGFALAT
CCCEEEEEEEECHHHHHHHHHHCCCEEEECCCCEEEEEEECCCCHHHHHHHHHCCEEEEE
ADWRELVASPDVDIIHVCTPDDLHHPIAAAALAAGKHVYCEKPLARTVAEAEDLYDRARA
HHHHHHHCCCCCCEEEEECCCHHCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHC
SGRVAQIAFQMRFGSAVQAARRLIRDGTLGEITSFRLTFLHSGYEDPERPLTWRLDSART
CCCEEEEEEHHHHCHHHHHHHHHHHCCCCCHHHHEEEEEEECCCCCCCCCEEEEECCCCC
GGGVLYDLGSHAVDLLTFLLGRPRRVMGLTRTFIKERPVATGSDRKAPVKVDDVALVTME
CCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEEEEEE
MEAGCVGVMEATRLATGVRRGPDLTIYGTRGSVAFNGFTNHNELNLYLKQEKVPGLSGWE
CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCEEEEEEEECCCCCCCCCC
TINTGGRNPVPLSVAAQAAFLTAVRDGRTDAEPNFATGLQVQRVLAAVQESARTGQWVSV
EECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]