| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893793
Identifier: 51893793
GI number: 51893793
Start: 2849199
End: 2849936
Strand: Reverse
Name: 51893793
Synonym: STH2655
Alternate gene names: NA
Gene position: 2849936-2849199 (Counterclockwise)
Preceding gene: 51893794
Following gene: 51893789
Centisome position: 79.92
GC content: 67.34
Gene sequence:
>738_bases ATGAGTCTCGCCTACGGTGCGGGCAGGTTCGTCGCCTGTGCGGACGGAGGTCTGTCTGCCTCCACGGACGGCTTGACGTG GACCCCCGTCCCGTTGGACGCGCGCTACTGGCATATTGACCTCTCGTGTACCGGGAAGGAGTTCGTGGCCACCGGGTGCA TCACGAGCAGAACCTGTGAGGTCATCCTTACGTCGGCCGACGGCGTCTCCCGGTATCAGCGTGTCGGGTTGGCGGCGTTC GACCAGGTCGCCTACGGGAACGGGCGCTATGTCCTGAGCTTTGGCAATGCGGCCTGGACCTGGTCGTCCGCTGACCTGAC CAACTGGACGACCGTCAACACGCTCCTGTTCCTCGCCCTCACCTTTGACCAGGGGATGTTCGTCGCGGCCGACGCGGACG AGGGCACGATCCGGACGTCGGCTGACGGCGTGGAATGGACCGAAGTGTTCCATCCGGACCAGCCGGTGTACATCAGCGAT CTCGCCTACGGCGGCGGCCGGTTCGTGGCCGTGGGCGGGACGAACTCCGGCCCCCGGCGGGCCGTGGTCCTGACCTCCGG CGACGGGCGGCAGTGGAGCCTCCAGGTGCAGGAGGAGGCGGAGGGGCTGGTGCGGGTCGTGTACGGTGCCGGGCGCTTCG TCGCCAACAGCGAGGCTGCGCTGGCGGTATCCGAAGACGGCACCGGATGTCGGGTTCAGGTTTTGCGCGGAGACGAGGTC CGTGCGCGCAGAATCTGA
Upstream 100 bases:
>100_bases TCCCCGTTCTCACCCTGGTTCTGCTGCTGACCGCCGCCGGGACGGAGGCGGCGCCGCTGGCGTGGCAGACGGTGCCGACC CCCTTCGAGGGGAGCAGCAG
Downstream 100 bases:
>100_bases AGCTGACCAGGGTGGTTGGGTTCAGGTTTTGCGCGAACGACAGGTCGTGACGCGCAAAATCTGCAGGGGGTCGTGGGGGT CGGGCGCAGGTTTTGCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Cell Wall/Surface Repeat Protein
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MSLAYGAGRFVACADGGLSASTDGLTWTPVPLDARYWHIDLSCTGKEFVATGCITSRTCEVILTSADGVSRYQRVGLAAF DQVAYGNGRYVLSFGNAAWTWSSADLTNWTTVNTLLFLALTFDQGMFVAADADEGTIRTSADGVEWTEVFHPDQPVYISD LAYGGGRFVAVGGTNSGPRRAVVLTSGDGRQWSLQVQEEAEGLVRVVYGAGRFVANSEAALAVSEDGTGCRVQVLRGDEV RARRI
Sequences:
>Translated_245_residues MSLAYGAGRFVACADGGLSASTDGLTWTPVPLDARYWHIDLSCTGKEFVATGCITSRTCEVILTSADGVSRYQRVGLAAF DQVAYGNGRYVLSFGNAAWTWSSADLTNWTTVNTLLFLALTFDQGMFVAADADEGTIRTSADGVEWTEVFHPDQPVYISD LAYGGGRFVAVGGTNSGPRRAVVLTSGDGRQWSLQVQEEAEGLVRVVYGAGRFVANSEAALAVSEDGTGCRVQVLRGDEV RARRI >Mature_244_residues SLAYGAGRFVACADGGLSASTDGLTWTPVPLDARYWHIDLSCTGKEFVATGCITSRTCEVILTSADGVSRYQRVGLAAFD QVAYGNGRYVLSFGNAAWTWSSADLTNWTTVNTLLFLALTFDQGMFVAADADEGTIRTSADGVEWTEVFHPDQPVYISDL AYGGGRFVAVGGTNSGPRRAVVLTSGDGRQWSLQVQEEAEGLVRVVYGAGRFVANSEAALAVSEDGTGCRVQVLRGDEVR ARRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26172; Mature: 26041
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLAYGAGRFVACADGGLSASTDGLTWTPVPLDARYWHIDLSCTGKEFVATGCITSRTCE CCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCEEEECCCCCCEEE VILTSADGVSRYQRVGLAAFDQVAYGNGRYVLSFGNAAWTWSSADLTNWTTVNTLLFLAL EEEECCCCHHHHHHCCHHEEEEEEECCCEEEEEECCEEEEECCCCCCCCCHHHEEEEEEE TFDQGMFVAADADEGTIRTSADGVEWTEVFHPDQPVYISDLAYGGGRFVAVGGTNSGPRR EECCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCEE AVVLTSGDGRQWSLQVQEEAEGLVRVVYGAGRFVANSEAALAVSEDGTGCRVQVLRGDEV EEEEECCCCCEEEEEEHHHCCCEEEEEEECCEEEECCCEEEEEECCCCCEEEEEEECCCE RARRI EECCC >Mature Secondary Structure SLAYGAGRFVACADGGLSASTDGLTWTPVPLDARYWHIDLSCTGKEFVATGCITSRTCE CCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCEEEECCCCCCEEE VILTSADGVSRYQRVGLAAFDQVAYGNGRYVLSFGNAAWTWSSADLTNWTTVNTLLFLAL EEEECCCCHHHHHHCCHHEEEEEEECCCEEEEEECCEEEEECCCCCCCCCHHHEEEEEEE TFDQGMFVAADADEGTIRTSADGVEWTEVFHPDQPVYISDLAYGGGRFVAVGGTNSGPRR EECCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCEE AVVLTSGDGRQWSLQVQEEAEGLVRVVYGAGRFVANSEAALAVSEDGTGCRVQVLRGDEV EEEEECCCCCEEEEEEHHHCCCEEEEEEECCEEEECCCEEEEEECCCCCEEEEEEECCCE RARRI EECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA