Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is ordL [H]

Identifier: 51893789

GI number: 51893789

Start: 2843602

End: 2844981

Strand: Reverse

Name: ordL [H]

Synonym: STH2651

Alternate gene names: 51893789

Gene position: 2844981-2843602 (Counterclockwise)

Preceding gene: 51893793

Following gene: 51893785

Centisome position: 79.78

GC content: 71.52

Gene sequence:

>1380_bases
ATGGTATATAATAATCGCGCTCATCAGGCAGACGGGGGAGGCGGAGCCGTGGTCTACCGGGAGAAGAGCTTCTGGCTGGA
GACGGCGGGGGAGTACCGGGAGCAGCCGCCCCTGGAGGGCGAGCGGACGGCGGACGTTTGCGTCGTCGGTGGGGGGTTCA
CCGGGGTCTCGGCCGCGCTGCACCTGAAAGAAAAAGCGCCCGGCCTGCGGGTGCTGGTGCTGGAGTCGGAGGTGGTGGGG
TTCGGCGCCAGTGGCCGCAACGCGGGGTTCTGCATGACCCTGTTCGGCCTGGCGCCGGAGGTGACCCGCTGGCGGTTCGG
CGCCGCCCGGCTCCGGGAGGCGGACGCGTACATGCTGCGGGCCGTGGACCTGGTCCGGCGCCGGGTAGCCGAGCACGGAA
TCGACTGCGACTTCGAGGAGACCGGCCTGCTCACCGTGGCCACCAACCCGGCGCAGCGGTTCCGCCTGCTCCGGGAGATG
GAGCTGGAGCGGAAGATCGGCCTCCATGAGACGGAGTGGCTGGAGGCCGACGCCGTGCAGGCGCAGGTCCGCTCGCCGCT
TTTCTGCGGCGGCCGGTTCGACCGGCACTGCGCCCTCCTGAACCCGGCCAAGCTGGTCCGGGGCCTGGCCCGGGCGGCCG
AGGAGGCGGGGGCCGAGATCTGCGAGCGCTCGCCGGTGGTGGAGGTGGTTCCCGGGTCCCGCGTGCGACTGCGCACCCCG
CGGGGGACGGTGACCGCGGAGAAGGTCATCTTCGCCACCAACGCCTACTCGGCCCGGCTCCGGCCCCTGCGTTTCCGGCA
GTTGCCGGTCCACACGTACATCGTCCTGACCGAGCCCCTTGCGCCGGAGCAGCTTTCCGCCGTGGGCTGGCAGGGGCGGC
AGGGCATCGAGGACGGCCGCAACCTCATCCACTACTTCCGGCTCACCCGGGACAACCGGCTGCTCATGGGCGGCAACGAT
GCCTTCTACTACTACGGCAGCGCCGACGACCGCGACCGCAGCGGGGCCATGCAGCAGCGGCTGCAGGAAGCCGTAAAGCG
GATCTTCCCGATGCTCTCGGGGATCCGCTTCACGCACCACTGGGGCGGGCCGATCTCGGCCACCCTGGACCTGGCGCCGC
TGATCGGCCGCATCGGCCCCAACATGTTCTACAGCGTCGGCTGCATGGGCCACGGCGTCGCGCTCTGCAACCTGAACGGC
GCGACCCTGGCGGACCTGGCCCTGGAGCGGCAGACCGACCTGACCGAGGTCTTCTTCGTGGACCGGCGGGCGCTGCCGGT
GCCGCCGGAGCCGCTGCGGTTTGCCGTGGCCGGGGCCCTGCTGACCGCAATGCGGCTGCAGGACCGGTGGCACGAGCGGG
GCAGCCGGCGGTCCGGCTAG

Upstream 100 bases:

>100_bases
CCGCGCGGCCGGCCCATCGTCCGGCATTCCTGAGCGAACCGCCAGCCGTCTGCCTCCGACCCACCGGCGGCGCAACGGAT
GGGGCAAGGACGCGTTGTGA

Downstream 100 bases:

>100_bases
GCGGCTAGAAGGTATCGAAGTGAATCGAGCCCGCGTTGGCCTCCAGCCGCACCGGGTACGTGCCCGCGCCGAGGATCTGC
GTGGTGGCGCGGGCCGGGCC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAALHLKEKAPGLRVLVLESEVVG
FGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLRAVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREM
ELERKIGLHETEWLEADAVQAQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP
RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGRNLIHYFRLTRDNRLLMGGND
AFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHHWGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNG
ATLADLALERQTDLTEVFFVDRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG

Sequences:

>Translated_459_residues
MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAALHLKEKAPGLRVLVLESEVVG
FGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLRAVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREM
ELERKIGLHETEWLEADAVQAQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP
RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGRNLIHYFRLTRDNRLLMGGND
AFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHHWGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNG
ATLADLALERQTDLTEVFFVDRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG
>Mature_459_residues
MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAALHLKEKAPGLRVLVLESEVVG
FGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLRAVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREM
ELERKIGLHETEWLEADAVQAQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP
RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGRNLIHYFRLTRDNRLLMGGND
AFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHHWGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNG
ATLADLALERQTDLTEVFFVDRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787559, Length=387, Percent_Identity=34.3669250645995, Blast_Score=201, Evalue=6e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 50909; Mature: 50909

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAAL
CCCCCCCCCCCCCCCEEEEEECCHHHHCCHHHHCCCCCCCCCCCCEEEECCCCHHHHHHE
HLKEKAPGLRVLVLESEVVGFGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLR
EEHHCCCCEEEEEEECEEEEECCCCCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHHHHH
AVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREMELERKIGLHETEWLEADAVQ
HHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP
HHHCCCEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECC
RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGR
CCCCEEEEEEEEECCCHHCCCCEEEEECCEEEEEEEECCCCHHHHHHCCCCCCCCHHHHH
NLIHYFRLTRDNRLLMGGNDAFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHH
HHHHHHEECCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
WGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNGATLADLALERQTDLTEVFFV
CCCCCEEHHHHHHHHHHCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEE
DRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAAL
CCCCCCCCCCCCCCCEEEEEECCHHHHCCHHHHCCCCCCCCCCCCEEEECCCCHHHHHHE
HLKEKAPGLRVLVLESEVVGFGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLR
EEHHCCCCEEEEEEECEEEEECCCCCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHHHHH
AVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREMELERKIGLHETEWLEADAVQ
HHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP
HHHCCCEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECC
RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGR
CCCCEEEEEEEEECCCHHCCCCEEEEECCEEEEEEEECCCCHHHHHHCCCCCCCCHHHHH
NLIHYFRLTRDNRLLMGGNDAFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHH
HHHHHHEECCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
WGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNGATLADLALERQTDLTEVFFV
CCCCCEEHHHHHHHHHHCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEE
DRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]