| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is ordL [H]
Identifier: 51893789
GI number: 51893789
Start: 2843602
End: 2844981
Strand: Reverse
Name: ordL [H]
Synonym: STH2651
Alternate gene names: 51893789
Gene position: 2844981-2843602 (Counterclockwise)
Preceding gene: 51893793
Following gene: 51893785
Centisome position: 79.78
GC content: 71.52
Gene sequence:
>1380_bases ATGGTATATAATAATCGCGCTCATCAGGCAGACGGGGGAGGCGGAGCCGTGGTCTACCGGGAGAAGAGCTTCTGGCTGGA GACGGCGGGGGAGTACCGGGAGCAGCCGCCCCTGGAGGGCGAGCGGACGGCGGACGTTTGCGTCGTCGGTGGGGGGTTCA CCGGGGTCTCGGCCGCGCTGCACCTGAAAGAAAAAGCGCCCGGCCTGCGGGTGCTGGTGCTGGAGTCGGAGGTGGTGGGG TTCGGCGCCAGTGGCCGCAACGCGGGGTTCTGCATGACCCTGTTCGGCCTGGCGCCGGAGGTGACCCGCTGGCGGTTCGG CGCCGCCCGGCTCCGGGAGGCGGACGCGTACATGCTGCGGGCCGTGGACCTGGTCCGGCGCCGGGTAGCCGAGCACGGAA TCGACTGCGACTTCGAGGAGACCGGCCTGCTCACCGTGGCCACCAACCCGGCGCAGCGGTTCCGCCTGCTCCGGGAGATG GAGCTGGAGCGGAAGATCGGCCTCCATGAGACGGAGTGGCTGGAGGCCGACGCCGTGCAGGCGCAGGTCCGCTCGCCGCT TTTCTGCGGCGGCCGGTTCGACCGGCACTGCGCCCTCCTGAACCCGGCCAAGCTGGTCCGGGGCCTGGCCCGGGCGGCCG AGGAGGCGGGGGCCGAGATCTGCGAGCGCTCGCCGGTGGTGGAGGTGGTTCCCGGGTCCCGCGTGCGACTGCGCACCCCG CGGGGGACGGTGACCGCGGAGAAGGTCATCTTCGCCACCAACGCCTACTCGGCCCGGCTCCGGCCCCTGCGTTTCCGGCA GTTGCCGGTCCACACGTACATCGTCCTGACCGAGCCCCTTGCGCCGGAGCAGCTTTCCGCCGTGGGCTGGCAGGGGCGGC AGGGCATCGAGGACGGCCGCAACCTCATCCACTACTTCCGGCTCACCCGGGACAACCGGCTGCTCATGGGCGGCAACGAT GCCTTCTACTACTACGGCAGCGCCGACGACCGCGACCGCAGCGGGGCCATGCAGCAGCGGCTGCAGGAAGCCGTAAAGCG GATCTTCCCGATGCTCTCGGGGATCCGCTTCACGCACCACTGGGGCGGGCCGATCTCGGCCACCCTGGACCTGGCGCCGC TGATCGGCCGCATCGGCCCCAACATGTTCTACAGCGTCGGCTGCATGGGCCACGGCGTCGCGCTCTGCAACCTGAACGGC GCGACCCTGGCGGACCTGGCCCTGGAGCGGCAGACCGACCTGACCGAGGTCTTCTTCGTGGACCGGCGGGCGCTGCCGGT GCCGCCGGAGCCGCTGCGGTTTGCCGTGGCCGGGGCCCTGCTGACCGCAATGCGGCTGCAGGACCGGTGGCACGAGCGGG GCAGCCGGCGGTCCGGCTAG
Upstream 100 bases:
>100_bases CCGCGCGGCCGGCCCATCGTCCGGCATTCCTGAGCGAACCGCCAGCCGTCTGCCTCCGACCCACCGGCGGCGCAACGGAT GGGGCAAGGACGCGTTGTGA
Downstream 100 bases:
>100_bases GCGGCTAGAAGGTATCGAAGTGAATCGAGCCCGCGTTGGCCTCCAGCCGCACCGGGTACGTGCCCGCGCCGAGGATCTGC GTGGTGGCGCGGGCCGGGCC
Product: putative oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAALHLKEKAPGLRVLVLESEVVG FGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLRAVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREM ELERKIGLHETEWLEADAVQAQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGRNLIHYFRLTRDNRLLMGGND AFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHHWGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNG ATLADLALERQTDLTEVFFVDRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG
Sequences:
>Translated_459_residues MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAALHLKEKAPGLRVLVLESEVVG FGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLRAVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREM ELERKIGLHETEWLEADAVQAQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGRNLIHYFRLTRDNRLLMGGND AFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHHWGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNG ATLADLALERQTDLTEVFFVDRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG >Mature_459_residues MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAALHLKEKAPGLRVLVLESEVVG FGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLRAVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREM ELERKIGLHETEWLEADAVQAQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGRNLIHYFRLTRDNRLLMGGND AFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHHWGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNG ATLADLALERQTDLTEVFFVDRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG
Specific function: Unknown
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787559, Length=387, Percent_Identity=34.3669250645995, Blast_Score=201, Evalue=6e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 50909; Mature: 50909
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAAL CCCCCCCCCCCCCCCEEEEEECCHHHHCCHHHHCCCCCCCCCCCCEEEECCCCHHHHHHE HLKEKAPGLRVLVLESEVVGFGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLR EEHHCCCCEEEEEEECEEEEECCCCCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHHHHH AVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREMELERKIGLHETEWLEADAVQ HHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP HHHCCCEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECC RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGR CCCCEEEEEEEEECCCHHCCCCEEEEECCEEEEEEEECCCCHHHHHHCCCCCCCCHHHHH NLIHYFRLTRDNRLLMGGNDAFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHH HHHHHHEECCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE WGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNGATLADLALERQTDLTEVFFV CCCCCEEHHHHHHHHHHCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEE DRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MVYNNRAHQADGGGGAVVYREKSFWLETAGEYREQPPLEGERTADVCVVGGGFTGVSAAL CCCCCCCCCCCCCCCEEEEEECCHHHHCCHHHHCCCCCCCCCCCCEEEECCCCHHHHHHE HLKEKAPGLRVLVLESEVVGFGASGRNAGFCMTLFGLAPEVTRWRFGAARLREADAYMLR EEHHCCCCEEEEEEECEEEEECCCCCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHHHHH AVDLVRRRVAEHGIDCDFEETGLLTVATNPAQRFRLLREMELERKIGLHETEWLEADAVQ HHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AQVRSPLFCGGRFDRHCALLNPAKLVRGLARAAEEAGAEICERSPVVEVVPGSRVRLRTP HHHCCCEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECC RGTVTAEKVIFATNAYSARLRPLRFRQLPVHTYIVLTEPLAPEQLSAVGWQGRQGIEDGR CCCCEEEEEEEEECCCHHCCCCEEEEECCEEEEEEEECCCCHHHHHHCCCCCCCCHHHHH NLIHYFRLTRDNRLLMGGNDAFYYYGSADDRDRSGAMQQRLQEAVKRIFPMLSGIRFTHH HHHHHHEECCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE WGGPISATLDLAPLIGRIGPNMFYSVGCMGHGVALCNLNGATLADLALERQTDLTEVFFV CCCCCEEHHHHHHHHHHCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEE DRRALPVPPEPLRFAVAGALLTAMRLQDRWHERGSRRSG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]