| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is yflS [H]
Identifier: 51893774
GI number: 51893774
Start: 2830331
End: 2831749
Strand: Reverse
Name: yflS [H]
Synonym: STH2636
Alternate gene names: 51893774
Gene position: 2831749-2830331 (Counterclockwise)
Preceding gene: 51893781
Following gene: 51893771
Centisome position: 79.41
GC content: 65.19
Gene sequence:
>1419_bases GTGCGCAACGACGACCGGTCCAAGCTCATCCGCGGTCTGATCTGTGTTGCTGTCGGTCTCATCATCTGGTTCCTGCCTGC TCCCGGTGATCTGGAGCCCGTGGCCATGCACCTCCTGGGCATCTTTGTCGCGACCATCCTCGGACTGATCCTTCAGCCGC TTCCCCAGGGGGCCGTTGTGATCACCGCCGTGGCGGTGACGGCGATCACGGGTACCCTGTCGATCGGCGACGCCCTCAAC GGATTCAAGGACTCCACCGTCTGGCTGATCGTGACGGCCTTCCTCTTCGCCCGGGGCCTGATCAAGACCGGACTGGGCCG CCGCATCTCCTTCATGCTGGTGAAGCGGTTCGGCAAGTCCACCCTGGGCCTCGGCTACGCCCTGGCGCTGTCGGACACGG TGCTGGCGCCGGCGACCCCGTCCAACACCGCCCGCGCCGGCGGCATCCTCTTCCCGATCGTCCGTGCGCTCTGCTCCTCG ATGGGTTCTGAGCCCGGCCCCACCGCCAAGCGGGTCGGCCAGTACCTGATGTACAACTCCTTCCAGATCTGCTGCATCAC GTCGGCGCTGTTCTTCACGGGCGTGGCCCCCAACTCGCTCATCGCCACGCTGGCCAAGGAGAACTTCGGCTACGAGATCA CCTGGCTCGGCTGGCTGTGGGCGGCGCTCCTGCCGGGCGTCATCTGCATCGCCATCCTTCCCCGGATTTACTACAAGATT TTCAATCCGGAGCTGAAGTACTCGCCCGAGGCTCCGGCCCTGGCGGAGAAGGAACTGGCGAAGATGGGCCCGATGAGCAC GGCCGAAAAAGGCATGCTCGCCGTCTTCCTCCTGACCCTGGTCCTGTGGGCCACCTCCCAGTGGACGAACCTCAACGCGA CCGCCATCGCGCTGCTCGGCGTCGCCATTCTGCTGGTCATCGGCGTCCTCGACTGGCAGGACGTGCTGGCCGAGAAGGGC GGCTGGGATGCGCTGATCTGGTTCGGCGGCCTCGTCGGCCTGGCCACCGGCCTCTCCAAGGTCGGCATCATCGGCTGGCT GGCCTCCATCCTCGAGACCTCCCTGGGTGGCATCTCGTCGTGGTTCCTGGCATTTATCCTGGTTGTTATCGCCTACACCT ATTCGCACTACTTCATCGCCTCCATGACCGCGCACGCCACGGCGTTCTTCGTGCCCCTGGCCCTGGTGGCCATCAGCGCC GGTGCGCCTTTGGAGATCACCGTGCTGGTGCTGGGCTTCTTCAACTCCCTGAACGCCGTCATGACCCACTACGGCACCGG TCCCGCCCCGATCTACTTCGGCGCGGGGTACATCGACCAGGGCACCTGGTGGAAATGGGGCTTCGTCACCAGCCTGATCA ACCTGGTGGTCTGGCTGGGCGCCGGCAGCCTCTGGTGGAAGGTCATCGGCCTGTGGTAG
Upstream 100 bases:
>100_bases AGCTACCCGCGGGACTTCGTGATACTGTTCACATAGAACCGGAACCTGCCAGTCCCCAAAGCGTTGGCGCTCGCACTGGT CATGGACAGGAGGGATTCGT
Downstream 100 bases:
>100_bases CGCTCCCGGAATGGGCGAGGCCCGGTCGGGTTCCCCGACCGGGCCTCGCGCGCAGGCGGCGCGTGAGGGCCGCGGGCGGT TGCCCGCGGCTCTGACTCGT
Product: 2-oxoglutarate/malate translocator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MRNDDRSKLIRGLICVAVGLIIWFLPAPGDLEPVAMHLLGIFVATILGLILQPLPQGAVVITAVAVTAITGTLSIGDALN GFKDSTVWLIVTAFLFARGLIKTGLGRRISFMLVKRFGKSTLGLGYALALSDTVLAPATPSNTARAGGILFPIVRALCSS MGSEPGPTAKRVGQYLMYNSFQICCITSALFFTGVAPNSLIATLAKENFGYEITWLGWLWAALLPGVICIAILPRIYYKI FNPELKYSPEAPALAEKELAKMGPMSTAEKGMLAVFLLTLVLWATSQWTNLNATAIALLGVAILLVIGVLDWQDVLAEKG GWDALIWFGGLVGLATGLSKVGIIGWLASILETSLGGISSWFLAFILVVIAYTYSHYFIASMTAHATAFFVPLALVAISA GAPLEITVLVLGFFNSLNAVMTHYGTGPAPIYFGAGYIDQGTWWKWGFVTSLINLVVWLGAGSLWWKVIGLW
Sequences:
>Translated_472_residues MRNDDRSKLIRGLICVAVGLIIWFLPAPGDLEPVAMHLLGIFVATILGLILQPLPQGAVVITAVAVTAITGTLSIGDALN GFKDSTVWLIVTAFLFARGLIKTGLGRRISFMLVKRFGKSTLGLGYALALSDTVLAPATPSNTARAGGILFPIVRALCSS MGSEPGPTAKRVGQYLMYNSFQICCITSALFFTGVAPNSLIATLAKENFGYEITWLGWLWAALLPGVICIAILPRIYYKI FNPELKYSPEAPALAEKELAKMGPMSTAEKGMLAVFLLTLVLWATSQWTNLNATAIALLGVAILLVIGVLDWQDVLAEKG GWDALIWFGGLVGLATGLSKVGIIGWLASILETSLGGISSWFLAFILVVIAYTYSHYFIASMTAHATAFFVPLALVAISA GAPLEITVLVLGFFNSLNAVMTHYGTGPAPIYFGAGYIDQGTWWKWGFVTSLINLVVWLGAGSLWWKVIGLW >Mature_472_residues MRNDDRSKLIRGLICVAVGLIIWFLPAPGDLEPVAMHLLGIFVATILGLILQPLPQGAVVITAVAVTAITGTLSIGDALN GFKDSTVWLIVTAFLFARGLIKTGLGRRISFMLVKRFGKSTLGLGYALALSDTVLAPATPSNTARAGGILFPIVRALCSS MGSEPGPTAKRVGQYLMYNSFQICCITSALFFTGVAPNSLIATLAKENFGYEITWLGWLWAALLPGVICIAILPRIYYKI FNPELKYSPEAPALAEKELAKMGPMSTAEKGMLAVFLLTLVLWATSQWTNLNATAIALLGVAILLVIGVLDWQDVLAEKG GWDALIWFGGLVGLATGLSKVGIIGWLASILETSLGGISSWFLAFILVVIAYTYSHYFIASMTAHATAFFVPLALVAISA GAPLEITVLVLGFFNSLNAVMTHYGTGPAPIYFGAGYIDQGTWWKWGFVTSLINLVVWLGAGSLWWKVIGLW
Specific function: Might be a malate transporter [H]
COG id: COG0471
COG function: function code P; Di- and tricarboxylate transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SLC13A transporter (TC 2.A.47) family [H]
Homologues:
Organism=Escherichia coli, GI1786986, Length=474, Percent_Identity=37.9746835443038, Blast_Score=335, Evalue=3e-93, Organism=Escherichia coli, GI1786829, Length=492, Percent_Identity=35.5691056910569, Blast_Score=275, Evalue=4e-75, Organism=Escherichia coli, GI1789444, Length=480, Percent_Identity=35.8333333333333, Blast_Score=271, Evalue=5e-74,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001898 [H]
Pfam domain/function: PF00939 Na_sulph_symp [H]
EC number: NA
Molecular weight: Translated: 50570; Mature: 50570
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNDDRSKLIRGLICVAVGLIIWFLPAPGDLEPVAMHLLGIFVATILGLILQPLPQGAVV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ITAVAVTAITGTLSIGDALNGFKDSTVWLIVTAFLFARGLIKTGLGRRISFMLVKRFGKS HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH TLGLGYALALSDTVLAPATPSNTARAGGILFPIVRALCSSMGSEPGPTAKRVGQYLMYNS HHCCHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC FQICCITSALFFTGVAPNSLIATLAKENFGYEITWLGWLWAALLPGVICIAILPRIYYKI CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH FNPELKYSPEAPALAEKELAKMGPMSTAEKGMLAVFLLTLVLWATSQWTNLNATAIALLG CCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH VAILLVIGVLDWQDVLAEKGGWDALIWFGGLVGLATGLSKVGIIGWLASILETSLGGISS HHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH WFLAFILVVIAYTYSHYFIASMTAHATAFFVPLALVAISAGAPLEITVLVLGFFNSLNAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH MTHYGTGPAPIYFGAGYIDQGTWWKWGFVTSLINLVVWLGAGSLWWKVIGLW HHHCCCCCCCEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCC >Mature Secondary Structure MRNDDRSKLIRGLICVAVGLIIWFLPAPGDLEPVAMHLLGIFVATILGLILQPLPQGAVV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ITAVAVTAITGTLSIGDALNGFKDSTVWLIVTAFLFARGLIKTGLGRRISFMLVKRFGKS HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH TLGLGYALALSDTVLAPATPSNTARAGGILFPIVRALCSSMGSEPGPTAKRVGQYLMYNS HHCCHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC FQICCITSALFFTGVAPNSLIATLAKENFGYEITWLGWLWAALLPGVICIAILPRIYYKI CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH FNPELKYSPEAPALAEKELAKMGPMSTAEKGMLAVFLLTLVLWATSQWTNLNATAIALLG CCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH VAILLVIGVLDWQDVLAEKGGWDALIWFGGLVGLATGLSKVGIIGWLASILETSLGGISS HHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH WFLAFILVVIAYTYSHYFIASMTAHATAFFVPLALVAISAGAPLEITVLVLGFFNSLNAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH MTHYGTGPAPIYFGAGYIDQGTWWKWGFVTSLINLVVWLGAGSLWWKVIGLW HHHCCCCCCCEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377; 12949159 [H]