Definition | Borrelia garinii PBi chromosome chromosome linear, complete sequence. |
---|---|
Accession | NC_006156 |
Length | 904,246 |
Click here to switch to the map view.
The map label for this gene is yajC [C]
Identifier: 51598906
GI number: 51598906
Start: 692416
End: 692730
Strand: Direct
Name: yajC [C]
Synonym: BG0674
Alternate gene names: 51598906
Gene position: 692416-692730 (Clockwise)
Preceding gene: 51598905
Following gene: 161898744
Centisome position: 76.57
GC content: 26.03
Gene sequence:
>315_bases GTGTTTTTATTGCAAGAATTTAGCAGCAATAGCATCTTTTTTCGAAGTTTATTGGTTTTTTTGCCTGTTATTGCTATATT TTGGTTTTTAGTAATATTTCCTCAGCGCAAGGAAGAAAAGAATAAAAAAGAAATGATAAAAAATTTAAAAAAAGGCGATA AGGTATTAACAATAGGTGGAATTTTTGGAGTTGTAAAAAAATTAGGTGATACGAATGTTATTTTAGAATTAAATCCAAAT ATCGAAGCAGTATTTGTAAAAAACTCTATTGATAAAGTTTTGTCTGAAAAAAATGAAGTTAAAAAGGTGCTATAA
Upstream 100 bases:
>100_bases ATTATACCAAAAAAGACGACTTTAAGCTTTTATTTGGGGTAGTTTATCCTGATGATATTAATAAGATAAAAGTGACATAT GTATAGTAAGGGGAGGGTTT
Downstream 100 bases:
>100_bases GGTATTATATAATTTAAGGTAAAATTAAAACTGTTAGCTAATAATGGTATTTATTAAAAATTTTAAGGATTTGTATAATG AAAAAAGGATCTAAGCTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 104; Mature: 104
Protein sequence:
>104_residues MFLLQEFSSNSIFFRSLLVFLPVIAIFWFLVIFPQRKEEKNKKEMIKNLKKGDKVLTIGGIFGVVKKLGDTNVILELNPN IEAVFVKNSIDKVLSEKNEVKKVL
Sequences:
>Translated_104_residues MFLLQEFSSNSIFFRSLLVFLPVIAIFWFLVIFPQRKEEKNKKEMIKNLKKGDKVLTIGGIFGVVKKLGDTNVILELNPN IEAVFVKNSIDKVLSEKNEVKKVL >Mature_104_residues MFLLQEFSSNSIFFRSLLVFLPVIAIFWFLVIFPQRKEEKNKKEMIKNLKKGDKVLTIGGIFGVVKKLGDTNVILELNPN IEAVFVKNSIDKVLSEKNEVKKVL
Specific function: Unknown
COG id: COG1862
COG function: function code U; Preprotein translocase subunit YajC
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0092 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003849 [H]
Pfam domain/function: PF02699 YajC [H]
EC number: NA
Molecular weight: Translated: 11957; Mature: 11957
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLLQEFSSNSIFFRSLLVFLPVIAIFWFLVIFPQRKEEKNKKEMIKNLKKGDKVLTIGG CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEHH IFGVVKKLGDTNVILELNPNIEAVFVKNSIDKVLSEKNEVKKVL HHHHHHHCCCCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFLLQEFSSNSIFFRSLLVFLPVIAIFWFLVIFPQRKEEKNKKEMIKNLKKGDKVLTIGG CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEHH IFGVVKKLGDTNVILELNPNIEAVFVKNSIDKVLSEKNEVKKVL HHHHHHHCCCCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9403685 [H]