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The map label for this gene is secD [H]

Identifier: 161898744

GI number: 161898744

Start: 692808

End: 694568

Strand: Direct

Name: secD [H]

Synonym: BG0675

Alternate gene names: 161898744

Gene position: 692808-694568 (Clockwise)

Preceding gene: 51598906

Following gene: 51598908

Centisome position: 76.62

GC content: 32.65

Gene sequence:

>1761_bases
ATGAAAAAAGGATCTAAGCTCATATTGATATTGTTGGTGACGCTTTTTGCATGTCTTTTAATATTCCCGACTTTAAAGTG
GTATTTTTTAATGAGTATTGAGGATAAAAAGATAAGCTCATATTCACAAGAGGCTTTGAGGGATTACTCAAAGAAAAAAG
CTTTGGATGATCTTGTTAAGCTTAAGGAGTTGTATCATAAAGATCCCAATAGCAGTATTCCGTCTAATCTTTCTTATTTG
ATTCCGATAGCAAAAAATAATTATAAGTCTTCAATGAAAATTCCGCCCAATTTTTTTACTGCTAAATCTTTGCGTGAAGG
ATTTTTGACCGATTCGGATATGGGAGAAGTAAGTTTAGAGATTTATAGACATTATGAGAACATAAAGAAGAGTAAAAGCA
GAATAATACATCTTGGGCTTGATCTGTCTGGAGGTATGAGTGTTACCATTTCTCTTGATTATTCAAGTGTTGAAAAAAAA
TTAGGTCGTTCTTTGACCTTTGCTGAGAAAGAAGATGCTATTTACCGCATAATGCAAATTCTTAAGGATAGGGTGGATAG
GTTTGGGCTTACAGAGCCTAAAATTGCAAGAGAGGCTGGAGGAAATAAAATTTTCTTAGATATTCCTGGAGAAAAAGATG
AAAGTAGGGTAAGCACTCTTTTGAGTGGGAAAGGCAATTTAACTTTTTATGTGGTTGATGACGAACTTACATCTCTTTTA
CATAAAAAAATATTAGAAGCAGGCTCTCTTTTTTCTATTTCCGAAATTCAGAAAAATATGAACCTTCCAGATAGTAAGCA
AATTTTTCCTTGGTATGTTAAGGATTCTTATGGAGTGGATGATGAGTCATCAGTGCGTTATTATGTAGTTGATGCAAGTC
CTGAAAATTCATTTGATGGTGCTCATATTAAAGATGCCGGGGTTTCTAATGACCCTAGAACAGGCCGAGATATTGTTGCT
TTTAATCTTGATGTTGATGGGAGTGAAAAATTTTTTAAATTTACTCAAAAAAATGTTGGAAAGTCTTTGGCCGTTGTTAT
GGAAGGTAAAATTAAGTCTGTAGCAGGAATTGGGTACGCTATTACTGGAGGCAATGTTTCAATTCAAGGCGATTCTTTTG
ATAAAAAAGAGGCCTTAGATCTTGCTTTGGTGTTTAAAACTGCAGCCTTTCCGGTTGATATTAAAATAGATGATTTGAGA
ATAATAGGGCCTACTCTTGGTGCTAAGACTGTTGATCTCGGTATTAAATCTTCTGCACTTGCTCTTTGTTTAGTTTTTTT
ATTTATGTGTATTTATTATGGTTTGAGTGGCGTTGTAGCTGGATTTTCACTTGTTATTTATAATGTATTTTTAATTTTAG
CAATATTGTCTGCCTTTAATTTTACTTTAACTTTAACAAGTATTGCAGGTCTTATTTTGACAATGGGTATGGCTGTGGAC
ATAAATATAGTTATTTATGAAAGAATTAAAGAAGAAATTAGAGAAGGCAGAAAATTTGAAAATGCGTTTGAAGATGGTTT
TAAAAAAGCCTTTTTATCTATTATGGATGCAAATATAACGACATTTATTGCAGTGCTTTTTTTAACTCTTCTTGGGACAG
GAGTTATTCAAGGTTTTGCATGGTCTCTTTCTGTTGGAATTGTGGCATCTCTTTTTAGTAGTTTGATTTTTTCAAGATTT
ATTTTGGAATTGATCATATCTGCTAGAAAAAGCAAATTTATAAGTATATCTTGGAGTTCAAAATATGCAAAGAGTAATTA
A

Upstream 100 bases:

>100_bases
ATGAAGTTAAAAAGGTGCTATAAGGTATTATATAATTTAAGGTAAAATTAAAACTGTTAGCTAATAATGGTATTTATTAA
AAATTTTAAGGATTTGTATA

Downstream 100 bases:

>100_bases
TTTTTCAAAATATGGAAGCAATTTTTTAATTGTTAGTGTTATTTTGACTTTTATTGGGCTTATTTATACCTTTTTTTATC
ATGGTGGATACAATTGGGGA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 586; Mature: 586

Protein sequence:

>586_residues
MKKGSKLILILLVTLFACLLIFPTLKWYFLMSIEDKKISSYSQEALRDYSKKKALDDLVKLKELYHKDPNSSIPSNLSYL
IPIAKNNYKSSMKIPPNFFTAKSLREGFLTDSDMGEVSLEIYRHYENIKKSKSRIIHLGLDLSGGMSVTISLDYSSVEKK
LGRSLTFAEKEDAIYRIMQILKDRVDRFGLTEPKIAREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLL
HKKILEAGSLFSISEIQKNMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDIVA
FNLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEALDLALVFKTAAFPVDIKIDDLR
IIGPTLGAKTVDLGIKSSALALCLVFLFMCIYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
INIVIYERIKEEIREGRKFENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRF
ILELIISARKSKFISISWSSKYAKSN

Sequences:

>Translated_586_residues
MKKGSKLILILLVTLFACLLIFPTLKWYFLMSIEDKKISSYSQEALRDYSKKKALDDLVKLKELYHKDPNSSIPSNLSYL
IPIAKNNYKSSMKIPPNFFTAKSLREGFLTDSDMGEVSLEIYRHYENIKKSKSRIIHLGLDLSGGMSVTISLDYSSVEKK
LGRSLTFAEKEDAIYRIMQILKDRVDRFGLTEPKIAREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLL
HKKILEAGSLFSISEIQKNMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDIVA
FNLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEALDLALVFKTAAFPVDIKIDDLR
IIGPTLGAKTVDLGIKSSALALCLVFLFMCIYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
INIVIYERIKEEIREGRKFENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRF
ILELIISARKSKFISISWSSKYAKSN
>Mature_586_residues
MKKGSKLILILLVTLFACLLIFPTLKWYFLMSIEDKKISSYSQEALRDYSKKKALDDLVKLKELYHKDPNSSIPSNLSYL
IPIAKNNYKSSMKIPPNFFTAKSLREGFLTDSDMGEVSLEIYRHYENIKKSKSRIIHLGLDLSGGMSVTISLDYSSVEKK
LGRSLTFAEKEDAIYRIMQILKDRVDRFGLTEPKIAREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLL
HKKILEAGSLFSISEIQKNMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDIVA
FNLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEALDLALVFKTAAFPVDIKIDDLR
IIGPTLGAKTVDLGIKSSALALCLVFLFMCIYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
INIVIYERIKEEIREGRKFENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRF
ILELIISARKSKFISISWSSKYAKSN

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=433, Percent_Identity=30.2540415704388, Blast_Score=192, Evalue=5e-50,
Organism=Escherichia coli, GI1786610, Length=170, Percent_Identity=28.2352941176471, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022645 [H]

Pfam domain/function: PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65072; Mature: 65072

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGSKLILILLVTLFACLLIFPTLKWYFLMSIEDKKISSYSQEALRDYSKKKALDDLVK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LKELYHKDPNSSIPSNLSYLIPIAKNNYKSSMKIPPNFFTAKSLREGFLTDSDMGEVSLE
HHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
IYRHYENIKKSKSRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEKEDAIYRIMQI
HHHHHHHHHHHCCEEEEEEEECCCCEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHH
LKDRVDRFGLTEPKIAREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLL
HHHHHHHCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECHHHHHHH
HKKILEAGSLFSISEIQKNMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDG
HHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
AHIKDAGVSNDPRTGRDIVAFNLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYA
CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHCCCEE
ITGGNVSIQGDSFDKKEALDLALVFKTAAFPVDIKIDDLRIIGPTLGAKTVDLGIKSSAL
EECCEEEEECCCCCHHHHHHHHHEEHHCCCEEEEEECCEEEECCCCCCEEEECCCCHHHH
ALCLVFLFMCIYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
INIVIYERIKEEIREGRKFENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFA
EEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WSLSVGIVASLFSSLIFSRFILELIISARKSKFISISWSSKYAKSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MKKGSKLILILLVTLFACLLIFPTLKWYFLMSIEDKKISSYSQEALRDYSKKKALDDLVK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LKELYHKDPNSSIPSNLSYLIPIAKNNYKSSMKIPPNFFTAKSLREGFLTDSDMGEVSLE
HHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
IYRHYENIKKSKSRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEKEDAIYRIMQI
HHHHHHHHHHHCCEEEEEEEECCCCEEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHH
LKDRVDRFGLTEPKIAREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLL
HHHHHHHCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECHHHHHHH
HKKILEAGSLFSISEIQKNMNLPDSKQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDG
HHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
AHIKDAGVSNDPRTGRDIVAFNLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYA
CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHCCCEE
ITGGNVSIQGDSFDKKEALDLALVFKTAAFPVDIKIDDLRIIGPTLGAKTVDLGIKSSAL
EECCEEEEECCCCCHHHHHHHHHEEHHCCCEEEEEECCEEEECCCCCCEEEECCCCHHHH
ALCLVFLFMCIYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
INIVIYERIKEEIREGRKFENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFA
EEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WSLSVGIVASLFSSLIFSRFILELIISARKSKFISISWSSKYAKSN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]