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The map label for this gene is dmsB [H]

Identifier: 50842000

GI number: 50842000

Start: 567207

End: 567848

Strand: Reverse

Name: dmsB [H]

Synonym: PPA0516

Alternate gene names: 50842000

Gene position: 567848-567207 (Counterclockwise)

Preceding gene: 50842001

Following gene: 50841999

Centisome position: 22.18

GC content: 58.26

Gene sequence:

>642_bases
ATGGGAGAGAAGAACTATACGGCAAAAGGAGCCAAGTACGGCTTCTTCTTTGACCAGACACTGTGCACCGGGTGCAAAGC
CTGCCAAATCGCCTGCATCGACAAACACGACCTGCCCACGGGGGTGCGGTGGCGCCGAGTCGTCGAGTACAGCGGAGGAA
CTTGGCAGATCTCGGGGGACACTTTCAACCCCTCAGTCTTCACCTACTACACGTCAGTCTCATGCAACCACTGCGAGGAC
CCGATCTGCATGAAAGTCTGCCCTACCACGGCAATGTCCCGCCGCGATGACGGCACCGTCTACGTCGACCAAGACAAGTG
CGTGGGATGTCGATACTGTGAGTGGGCGTGCCCGTATAGCGCACCGCAGTACCGCAAGGACACTGGCCGAATGAGCAAAT
GCGATCTGTGCTACGACTATCGCAGTAAGGGTAAAGAGCCAGCCTGTGTAGCCGCTTGCCCGTCGCGAGCTCTGGATTGG
GGACCTATCGATGAGCTGCGCAGCACATACGGCAATGAGGACGCCATCGCTCCACTGCCTGATCCTTCGGTAACCAAACC
GCACCTAGTGATCACTGCGCATCGTGACGCCCAGAGGTGGGACGAGGGCACCGGCGAGATCGCTAATACCAAGGAGATCT
GA

Upstream 100 bases:

>100_bases
CATCAGCATATGACGAACTAGCATCGGCAACCATAGGCAAAATCGCAAATCGGGTTTACACCGACCTGATGAACATCCGG
AAAATCTAAGGAGTCAGAGG

Downstream 100 bases:

>100_bases
TGAACACCCACGACGTTCCGATGATCCTGTTCACCGTCGTCACACAGATGTGCGTTGGTGCCTTTTTGGTCCTTGGGACC
GCCCACGTGGGGGCAGCCAT

Product: anaerobic dimethyl sulfoxide reductase, chain B

Products: Reduced form of N-Oxide compounds [C]

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MGEKNYTAKGAKYGFFFDQTLCTGCKACQIACIDKHDLPTGVRWRRVVEYSGGTWQISGDTFNPSVFTYYTSVSCNHCED
PICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQYRKDTGRMSKCDLCYDYRSKGKEPACVAACPSRALDW
GPIDELRSTYGNEDAIAPLPDPSVTKPHLVITAHRDAQRWDEGTGEIANTKEI

Sequences:

>Translated_213_residues
MGEKNYTAKGAKYGFFFDQTLCTGCKACQIACIDKHDLPTGVRWRRVVEYSGGTWQISGDTFNPSVFTYYTSVSCNHCED
PICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQYRKDTGRMSKCDLCYDYRSKGKEPACVAACPSRALDW
GPIDELRSTYGNEDAIAPLPDPSVTKPHLVITAHRDAQRWDEGTGEIANTKEI
>Mature_212_residues
GEKNYTAKGAKYGFFFDQTLCTGCKACQIACIDKHDLPTGVRWRRVVEYSGGTWQISGDTFNPSVFTYYTSVSCNHCEDP
ICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQYRKDTGRMSKCDLCYDYRSKGKEPACVAACPSRALDWG
PIDELRSTYGNEDAIAPLPDPSVTKPHLVITAHRDAQRWDEGTGEIANTKEI

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=202, Percent_Identity=53.960396039604, Blast_Score=238, Evalue=2e-64,
Organism=Escherichia coli, GI1787872, Length=202, Percent_Identity=51.4851485148515, Blast_Score=231, Evalue=2e-62,
Organism=Escherichia coli, GI1787749, Length=172, Percent_Identity=34.8837209302326, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI2367345, Length=168, Percent_Identity=38.6904761904762, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789370, Length=184, Percent_Identity=34.7826086956522, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI226510944, Length=187, Percent_Identity=33.1550802139037, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1790326, Length=162, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789067, Length=185, Percent_Identity=31.3513513513514, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI2367245, Length=160, Percent_Identity=33.125, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788811, Length=151, Percent_Identity=35.0993377483444, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082180, Length=142, Percent_Identity=32.3943661971831, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787963, Length=140, Percent_Identity=30.7142857142857, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082179, Length=165, Percent_Identity=27.8787878787879, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787478, Length=93, Percent_Identity=36.5591397849462, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787740, Length=93, Percent_Identity=36.5591397849462, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082114, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789079, Length=180, Percent_Identity=28.8888888888889, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 23842; Mature: 23711

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
7.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKNYTAKGAKYGFFFDQTLCTGCKACQIACIDKHDLPTGVRWRRVVEYSGGTWQISGD
CCCCCCCCCCCEEEEEEHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECC
TFNPSVFTYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYS
CCCCCEEEEEEECCCCCCCCCEEEEECCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
APQYRKDTGRMSKCDLCYDYRSKGKEPACVAACPSRALDWGPIDELRSTYGNEDAIAPLP
CCCCHHHCCCCCCCCEEEHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCC
DPSVTKPHLVITAHRDAQRWDEGTGEIANTKEI
CCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GEKNYTAKGAKYGFFFDQTLCTGCKACQIACIDKHDLPTGVRWRRVVEYSGGTWQISGD
CCCCCCCCCCEEEEEEHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECC
TFNPSVFTYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYS
CCCCCEEEEEEECCCCCCCCCEEEEECCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
APQYRKDTGRMSKCDLCYDYRSKGKEPACVAACPSRALDWGPIDELRSTYGNEDAIAPLP
CCCCHHHCCCCCCCCEEEHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCC
DPSVTKPHLVITAHRDAQRWDEGTGEIANTKEI
CCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Iron-Sulfur Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]