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The map label for this gene is csp [H]

Identifier: 50841960

GI number: 50841960

Start: 528210

End: 528593

Strand: Direct

Name: csp [H]

Synonym: PPA0477

Alternate gene names: 50841960

Gene position: 528210-528593 (Clockwise)

Preceding gene: 50841959

Following gene: 50841961

Centisome position: 20.63

GC content: 60.16

Gene sequence:

>384_bases
ATGCCAACCGGAAAGGTGCGTTTCTACGACGCCACCAAGGGGTTCGGTTTCCTGACGAAGGACGGCGGCGGCGACGTGTA
CGTCAACGCTTCTGCCCTGCCCGCAGGGGTGAATACCCTGAAGCCCGGTCAGAAGGTTGATTTCGGGATTGTTGAGGGAC
GTCGAGGAGAGCAGGCCTTGTCCCTGCAGATCATCGAGACCCCTGCCTCGTTGTCCAAGGCGAGTCGCAAGAAGCCGCAG
GACATGGCGGTGATCTGTGAGGACCTCATTAAGATGCTCGACAAGATGGGCAATGGTTACCGGCACGGGCGTCACTCTGA
TTCGCGCACTGCCGGCGCCGTGGCCAAGATGCTTCGTGCAGTCGCTGACGAGTTGGAGCTGTGA

Upstream 100 bases:

>100_bases
ATCGAAGTATCGGATAATGGTGAGTGGTGGACCGTCGTCAAGGCTTGTAGCCTGGTATGGCGGTCCATCGACCGTCATGA
CCAGAAGGAGTGAGCCAGAG

Downstream 100 bases:

>100_bases
TGACACAGGTGACGTCGAAGCCGCGCACTGCGACCCGAACTATCAAAGCCGATGCGACCATTGCGAAGGCTGTTGATCAG
GCCCGGGAAGCTGCCGAGTA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MPTGKVRFYDATKGFGFLTKDGGGDVYVNASALPAGVNTLKPGQKVDFGIVEGRRGEQALSLQIIETPASLSKASRKKPQ
DMAVICEDLIKMLDKMGNGYRHGRHSDSRTAGAVAKMLRAVADELEL

Sequences:

>Translated_127_residues
MPTGKVRFYDATKGFGFLTKDGGGDVYVNASALPAGVNTLKPGQKVDFGIVEGRRGEQALSLQIIETPASLSKASRKKPQ
DMAVICEDLIKMLDKMGNGYRHGRHSDSRTAGAVAKMLRAVADELEL
>Mature_126_residues
PTGKVRFYDATKGFGFLTKDGGGDVYVNASALPAGVNTLKPGQKVDFGIVEGRRGEQALSLQIIETPASLSKASRKKPQD
MAVICEDLIKMLDKMGNGYRHGRHSDSRTAGAVAKMLRAVADELEL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 13639; Mature: 13508

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGKVRFYDATKGFGFLTKDGGGDVYVNASALPAGVNTLKPGQKVDFGIVEGRRGEQAL
CCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEE
SLQIIETPASLSKASRKKPQDMAVICEDLIKMLDKMGNGYRHGRHSDSRTAGAVAKMLRA
EEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
VADELEL
HHHHHCC
>Mature Secondary Structure 
PTGKVRFYDATKGFGFLTKDGGGDVYVNASALPAGVNTLKPGQKVDFGIVEGRRGEQAL
CCCCEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEE
SLQIIETPASLSKASRKKPQDMAVICEDLIKMLDKMGNGYRHGRHSDSRTAGAVAKMLRA
EEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
VADELEL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10048332; 10360571; 10431826; 11322871 [H]