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The map label for this gene is rhsD [H]

Identifier: 50841684

GI number: 50841684

Start: 236696

End: 237961

Strand: Reverse

Name: rhsD [H]

Synonym: PPA0195

Alternate gene names: 50841684

Gene position: 237961-236696 (Counterclockwise)

Preceding gene: 50841685

Following gene: 50841683

Centisome position: 9.29

GC content: 64.22

Gene sequence:

>1266_bases
ATGGCCCGGCTGTGCGGAGTGAAGGACCCGGATGGGGCCCACTGGCGCGCCTCCTACAACATCATCGGAGAACTGACCTC
GCTCACCGATCCCCCCGGGGTGAGTCTGCACGCCACTACTACCGCCCACCAGGCTCAGGTCACGAACGCCGCGGGTCGGG
TGATAGCCGCCGATCAGTTCGATGATTATGGGCGCATCGTCTCACGCACCGATGTTTTCGGTGCCACCAGCAGCATCGAC
TACAACACAGCCGGTCTGCCAGCCGTGCTTACTGACCCCCTCGGTGCACCCACCCGGTTCGACTATGACCAGGTAGGACA
CCTGTCCGCCATCACGAGCCCCACCGGGCTGCAAGAGCGCTACTCCTACGACGCAGCTGGGCGCTTGGCTAGCACAACCG
ATCCGACCGGCGCGGTTACCCGCTACCTTTACGATGCCGATTCCCGACTAACTGGCATCATCGACCCCACCGGGGTTGCC
ACCGAGTACAGCTGGGACCCTGTGGGTCGGCTCGTCGAAACGCGTGCCGGCGAGGTCGTCACCTTTACCGCTGACTATGA
CGTGTGCGGACGACCCACGCGCACCTGGGATCCGGTCACCGGAACCCGGAACTTCCGTTACAACACCGCTGGCCGCCTCA
TCACGGCAGTCGATGCTGCCGGCCAAGTCCACCGCTACACCTGGGACAAACGCGGACGACTGGTCACCACCACCAACGCC
GCCGCGCTGACCACCTATCGATACAACCAGCTCGACCAGATCGTCGAATCCACCGATCCCGCCGGCGGAACCCACCGTTA
CACCTGGAACCCGGCCGGGCGTCTCACCAGCCACACCGGCCCTGATGGCATCACGACCAGCTACGACACGCGCGGCGGGA
CAGAAACAGTCACCATTGACGGTCAGGTTTCTACCCGCAAGTGGTGGGACCTAGAGGCTCGCCAGCTTCACATCGACGAC
CACACCGACCCTGCGGCCCCTCTGCACCACACCATCAGTGTCGATGCGCGCGGGCTTGTTTGCGACCACACCACCACTGA
CGGTGACGGTAAGGTCATCAGCCGCCACCGCTGGGATTGGGATGGTGAGGGTCGTCTGACCCGCGCCGACGACACGCGCG
CCACCGTGTCATATACCTACCGGGGTGATGGGCTACCCACCCGTATTACTCATTCCGCCTTAGGCGCGGCGAGTCTGGCG
TGGGATAGTGCCGGGCGACTCACCGACGTCACCACCCCCGACCATCACGACCACTGGGGATCATGA

Upstream 100 bases:

>100_bases
CCAACCGGCGCCACGACGACACTGGCGCATGACGAGGTGGGGGATCTGGCGGGGATCGGTCTACCCGACGGGGGCCAGCT
GGGGATTCCTGCGTGACGCG

Downstream 100 bases:

>100_bases
TGGCGGCCTGGTGTGTGGGTATGTCCACGATGGGCGCGTCACGCGTGTCGCCCGTGATGCTCAGGGGCGGGTTACCGGGA
TAGAGGGGCCATCAGGGCGT

Product: putative RHS-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MARLCGVKDPDGAHWRASYNIIGELTSLTDPPGVSLHATTTAHQAQVTNAAGRVIAADQFDDYGRIVSRTDVFGATSSID
YNTAGLPAVLTDPLGAPTRFDYDQVGHLSAITSPTGLQERYSYDAAGRLASTTDPTGAVTRYLYDADSRLTGIIDPTGVA
TEYSWDPVGRLVETRAGEVVTFTADYDVCGRPTRTWDPVTGTRNFRYNTAGRLITAVDAAGQVHRYTWDKRGRLVTTTNA
AALTTYRYNQLDQIVESTDPAGGTHRYTWNPAGRLTSHTGPDGITTSYDTRGGTETVTIDGQVSTRKWWDLEARQLHIDD
HTDPAAPLHHTISVDARGLVCDHTTTDGDGKVISRHRWDWDGEGRLTRADDTRATVSYTYRGDGLPTRITHSALGAASLA
WDSAGRLTDVTTPDHHDHWGS

Sequences:

>Translated_421_residues
MARLCGVKDPDGAHWRASYNIIGELTSLTDPPGVSLHATTTAHQAQVTNAAGRVIAADQFDDYGRIVSRTDVFGATSSID
YNTAGLPAVLTDPLGAPTRFDYDQVGHLSAITSPTGLQERYSYDAAGRLASTTDPTGAVTRYLYDADSRLTGIIDPTGVA
TEYSWDPVGRLVETRAGEVVTFTADYDVCGRPTRTWDPVTGTRNFRYNTAGRLITAVDAAGQVHRYTWDKRGRLVTTTNA
AALTTYRYNQLDQIVESTDPAGGTHRYTWNPAGRLTSHTGPDGITTSYDTRGGTETVTIDGQVSTRKWWDLEARQLHIDD
HTDPAAPLHHTISVDARGLVCDHTTTDGDGKVISRHRWDWDGEGRLTRADDTRATVSYTYRGDGLPTRITHSALGAASLA
WDSAGRLTDVTTPDHHDHWGS
>Mature_420_residues
ARLCGVKDPDGAHWRASYNIIGELTSLTDPPGVSLHATTTAHQAQVTNAAGRVIAADQFDDYGRIVSRTDVFGATSSIDY
NTAGLPAVLTDPLGAPTRFDYDQVGHLSAITSPTGLQERYSYDAAGRLASTTDPTGAVTRYLYDADSRLTGIIDPTGVAT
EYSWDPVGRLVETRAGEVVTFTADYDVCGRPTRTWDPVTGTRNFRYNTAGRLITAVDAAGQVHRYTWDKRGRLVTTTNAA
ALTTYRYNQLDQIVESTDPAGGTHRYTWNPAGRLTSHTGPDGITTSYDTRGGTETVTIDGQVSTRKWWDLEARQLHIDDH
TDPAAPLHHTISVDARGLVCDHTTTDGDGKVISRHRWDWDGEGRLTRADDTRATVSYTYRGDGLPTRITHSALGAASLAW
DSAGRLTDVTTPDHHDHWGS

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=431, Percent_Identity=26.4501160092807, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1786917, Length=329, Percent_Identity=26.1398176291793, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI48994942, Length=281, Percent_Identity=26.6903914590747, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1790020, Length=281, Percent_Identity=26.6903914590747, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 45807; Mature: 45676

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLCGVKDPDGAHWRASYNIIGELTSLTDPPGVSLHATTTAHQAQVTNAAGRVIAADQF
CCCCCCCCCCCCCEEEEEEEEEEEHHHCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCC
DDYGRIVSRTDVFGATSSIDYNTAGLPAVLTDPLGAPTRFDYDQVGHLSAITSPTGLQER
CCHHHHEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCEEEECCCCCCHHH
YSYDAAGRLASTTDPTGAVTRYLYDADSRLTGIIDPTGVATEYSWDPVGRLVETRAGEVV
HCCCCCCCCCCCCCCCHHHEEEEECCCCCEEEEECCCCCCEECCCCHHHHHHHCCCCCEE
TFTADYDVCGRPTRTWDPVTGTRNFRYNTAGRLITAVDAAGQVHRYTWDKRGRLVTTTNA
EEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCEEEECCC
AALTTYRYNQLDQIVESTDPAGGTHRYTWNPAGRLTSHTGPDGITTSYDTRGGTETVTID
EEEEEEHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEC
GQVSTRKWWDLEARQLHIDDHTDPAAPLHHTISVDARGLVCDHTTTDGDGKVISRHRWDW
CCCCCCEEECCCEEEEEECCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEECCCC
DGEGRLTRADDTRATVSYTYRGDGLPTRITHSALGAASLAWDSAGRLTDVTTPDHHDHWG
CCCCCEEECCCCCEEEEEEEECCCCCHHHHHHHCCCHHEEECCCCCEEECCCCCCCCCCC
S
C
>Mature Secondary Structure 
ARLCGVKDPDGAHWRASYNIIGELTSLTDPPGVSLHATTTAHQAQVTNAAGRVIAADQF
CCCCCCCCCCCCEEEEEEEEEEEHHHCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCC
DDYGRIVSRTDVFGATSSIDYNTAGLPAVLTDPLGAPTRFDYDQVGHLSAITSPTGLQER
CCHHHHEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCEEEECCCCCCHHH
YSYDAAGRLASTTDPTGAVTRYLYDADSRLTGIIDPTGVATEYSWDPVGRLVETRAGEVV
HCCCCCCCCCCCCCCCHHHEEEEECCCCCEEEEECCCCCCEECCCCHHHHHHHCCCCCEE
TFTADYDVCGRPTRTWDPVTGTRNFRYNTAGRLITAVDAAGQVHRYTWDKRGRLVTTTNA
EEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCEEEECCC
AALTTYRYNQLDQIVESTDPAGGTHRYTWNPAGRLTSHTGPDGITTSYDTRGGTETVTID
EEEEEEHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCEEEEEC
GQVSTRKWWDLEARQLHIDDHTDPAAPLHHTISVDARGLVCDHTTTDGDGKVISRHRWDW
CCCCCCEEECCCEEEEEECCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEECCCC
DGEGRLTRADDTRATVSYTYRGDGLPTRITHSALGAASLAWDSAGRLTDVTTPDHHDHWG
CCCCCEEECCCCCEEEEEEEECCCCCHHHHHHHCCCHHEEECCCCCEEECCCCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]