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The map label for this gene is yvyD [H]

Identifier: 49188025

GI number: 49188025

Start: 4912475

End: 4913017

Strand: Reverse

Name: yvyD [H]

Synonym: BAS5039

Alternate gene names: 49188025

Gene position: 4913017-4912475 (Counterclockwise)

Preceding gene: 49188026

Following gene: 49188024

Centisome position: 93.96

GC content: 34.07

Gene sequence:

>543_bases
ATGAAATTCAACATTCGTGGTGAAAATATTGAAGTAACTCCAGCATTAAAGGAATATGTAGAGAAAAAACTAAGTAAGTT
AGAGCGTTATTTTGATACATTCCCAGAGATTAAAGTTAATTTAAAAGTATACTCTGACAAGCAACGTGTCGAGGTAACAA
TTCCATTTACTGATTTATTACTTCGTGCAGAAGAAACTAATAGCGATATGTACGCTGCTATCGATTTAGTAGTTGATAAA
CTAGAGCGACAAATTCGTAAACATAAAACAAAAGTAAATCGTAAGTTACGTGAGAAAGGTTCTATGAAAACGAACTTTAT
CCTTCCAGAAGCAGTAGCTGTTCTGGATGCGGTAGAAGAGGATGAATTAGAGCTTGTACGTACAAAACGATTCGATTTAA
AACCGATGGACGTTGAGGAAGCAATCCTACAAATGGATATGCTAGGACATAATTTCTTCGTCTTCACAAATGCTGATACA
AATGAAACTAATGTTGTATATGGCCGTAAAGATGGGAAATATGGTTTAATCGAAACTAAATAA

Upstream 100 bases:

>100_bases
AAAAAATCGCAATTCCACTAATTTTTTTAAAAAAGTTAGAAGGAGTTTTTAAGCCAGTGTCGAAATTATAGTACATAGGC
TTGAAAGGAGGAATTCATCT

Downstream 100 bases:

>100_bases
TAATTCAAAAGCGCAGCCGAAATGGCTGCGCTTTTTTTGCTGAAAATAGATTTTTTTAAAAAAGTTTTCTTAATTTAGAA
CGTGACATTCGGCCGATTGT

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKFNIRGENIEVTPALKEYVEKKLSKLERYFDTFPEIKVNLKVYSDKQRVEVTIPFTDLLLRAEETNSDMYAAIDLVVDK
LERQIRKHKTKVNRKLREKGSMKTNFILPEAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT
NETNVVYGRKDGKYGLIETK

Sequences:

>Translated_180_residues
MKFNIRGENIEVTPALKEYVEKKLSKLERYFDTFPEIKVNLKVYSDKQRVEVTIPFTDLLLRAEETNSDMYAAIDLVVDK
LERQIRKHKTKVNRKLREKGSMKTNFILPEAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT
NETNVVYGRKDGKYGLIETK
>Mature_180_residues
MKFNIRGENIEVTPALKEYVEKKLSKLERYFDTFPEIKVNLKVYSDKQRVEVTIPFTDLLLRAEETNSDMYAAIDLVVDK
LERQIRKHKTKVNRKLREKGSMKTNFILPEAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT
NETNVVYGRKDGKYGLIETK

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=94, Percent_Identity=42.5531914893617, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21039; Mature: 21039

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFNIRGENIEVTPALKEYVEKKLSKLERYFDTFPEIKVNLKVYSDKQRVEVTIPFTDLL
CEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECHHHHE
LRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSMKTNFILPEAVAVLDAVEE
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCC
DELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEEEEECC
>Mature Secondary Structure
MKFNIRGENIEVTPALKEYVEKKLSKLERYFDTFPEIKVNLKVYSDKQRVEVTIPFTDLL
CEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEECHHHHE
LRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLREKGSMKTNFILPEAVAVLDAVEE
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCC
DELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]