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The map label for this gene is cspC [H]

Identifier: 49188026

GI number: 49188026

Start: 4913341

End: 4913544

Strand: Reverse

Name: cspC [H]

Synonym: BAS5040

Alternate gene names: 49188026

Gene position: 4913544-4913341 (Counterclockwise)

Preceding gene: 49188027

Following gene: 49188025

Centisome position: 93.97

GC content: 37.75

Gene sequence:

>204_bases
ATGAACATGCAAGGAAGAGTGAAATGGTTTAATGCAGAAAAGGGATTTGGGTTTATTGAGCGTGAAGATGGTGATGATGT
GTTTGTTCATTTTTCTGCTATTCAACAAGATGGATATAAGTCATTAGAAGAAGGGCAACAAGTTGAGTTTGATATTGTAG
ATGGAGCACGTGGACCACAAGCAGCTAATGTTGTAAAACTGTAG

Upstream 100 bases:

>100_bases
TAATAAAAAGGCGATAAGTCTTCTTTGACTTCGTATGTTGTCATTCGTTATAGTCAAATTATGGGGCGAATGCCATGATT
TTTAGAGTGAAGGGAATGGA

Downstream 100 bases:

>100_bases
GTATATTGTTTTTGGGAAGAGAAAGCTGCGTTTGTGGCAACGTTATATATATGTAGTAGAACCTCTTGTTTTTTTGCAAG
GGGTTTTTGTTATAAAATGA

Product: cold shock protein CspC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MNMQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAANVVKL

Sequences:

>Translated_67_residues
MNMQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAANVVKL
>Mature_67_residues
MNMQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAANVVKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=48.4848484848485, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=48.4848484848485, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=48.4848484848485, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=47.6923076923077, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=66.6666666666667, Blast_Score=95, Evalue=7e-22,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=69.6969696969697, Blast_Score=95, Evalue=1e-21,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=67.1875, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=63.6363636363636, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=62.1212121212121, Blast_Score=85, Evalue=7e-19,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=62.1212121212121, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=72, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7550; Mature: 7550

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQ
CCCCCCEEEEECCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCC
AANVVKL
CCCEECC
>Mature Secondary Structure
MNMQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQ
CCCCCCEEEEECCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCC
AANVVKL
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]