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The map label for this gene is cggR [H]

Identifier: 49187976

GI number: 49187976

Start: 4865716

End: 4866744

Strand: Reverse

Name: cggR [H]

Synonym: BAS4990

Alternate gene names: 49187976

Gene position: 4866744-4865716 (Counterclockwise)

Preceding gene: 49187977

Following gene: 49187975

Centisome position: 93.08

GC content: 40.72

Gene sequence:

>1029_bases
ATGCGCTCATGGATTCAGAACACAAAAAAATTATTACCTGATCTGCTACCTGTTATGCAAACGAGAATGCAAATTCTTCA
ATACATTAGGCTCATGCAGCCGATTGGAAGAAGAAACTTATCAGCAAGTCTCGGTATGACAGAACGAGTATTGCGAAGTG
AAGTTCAAGTTTTGAAAGAACAAAACTTAGTTCACGTCGCTTCTTCTGGAATGACATTGACAGAAGAAGGAACAGCTTTA
GTTCTTGCTTTGGAAGACTTTATGAAAGAAATTTCCGGGTTAAAGGTTTTAGAAAAGCAACTTAAGGAAACATTAGACTT
GGATGAAGTTTTCGTTGTCCCTGGTGATAGTGATGAATCGCCTTGGGTCAAACTGGAGATGGGCCGTGCTTGTGTGACTT
GTATAAAAGACCGTCTGACAGCGAATAATATCGTTGCTGTGGCTGGAGGAACTACGCTAGCTGCTGTTGCGGACATGATG
CAGCTTGATTGCAAAGATTTACATATGCTATTTGTCCCAGCACGTGGTGGAATTGGAGAAGGCGTTGAATTAGAAGCCAA
TACCATTTGTGCCAAAATGGCGCAAAATACGATGAGTAATTATCGCTTATTGTATGTCCCAGACCATGTTAGCAGCGAAG
CATATGCGTCTATTGTGACAGAGCCTTCCGTGAAAGAAGTTCTTGAGTTGATTCGATCTTCCAATATCGTCATTCATGGA
ATAGGTGATGCGTTAACAATGGCACGCCGCAGAAATACTTCAGAAGCAGATTGGTTAAAGATTCAGGCAAGCGAAGCAGT
TGGTGAAGCTTTCGGTTATTACTTTAATGAACAAGGAAATGTTGTTCATAAAGTAAGAACAGTTGGTATGCAACTTGAGG
ATTTACAAAATGTATCTCACGTTGTTGCAGTCGCTGGAGGTTCTTCAAAGGCAAAGGCAATACAGGCTGTAATTAAACAA
GGGCACACTTCAATTCTAATTACAGATGAAGGTGCAGCAAAACAGTTAACAAAGGGTATTACCCTTTAA

Upstream 100 bases:

>100_bases
CAGGGATTATTTTTTTAACCTATGTGGGACGCAAAATGTCACTACGGGACGTAAAGTGACCACAGAGGAAAAATGAACCA
ATGTAGTGAGGAGAAAAGAT

Downstream 100 bases:

>100_bases
TATAATCCCCCAAGGAGGAAATTCAAATGACTAAAATTGGTATTAATGGATTTGGACGTATCGGACGTAACGTATTCCGC
GCAGCTCTTAACAACTCTGA

Product: gapA transcriptional regulator CggR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRSWIQNTKKLLPDLLPVMQTRMQILQYIRLMQPIGRRNLSASLGMTERVLRSEVQVLKEQNLVHVASSGMTLTEEGTAL
VLALEDFMKEISGLKVLEKQLKETLDLDEVFVVPGDSDESPWVKLEMGRACVTCIKDRLTANNIVAVAGGTTLAAVADMM
QLDCKDLHMLFVPARGGIGEGVELEANTICAKMAQNTMSNYRLLYVPDHVSSEAYASIVTEPSVKEVLELIRSSNIVIHG
IGDALTMARRRNTSEADWLKIQASEAVGEAFGYYFNEQGNVVHKVRTVGMQLEDLQNVSHVVAVAGGSSKAKAIQAVIKQ
GHTSILITDEGAAKQLTKGITL

Sequences:

>Translated_342_residues
MRSWIQNTKKLLPDLLPVMQTRMQILQYIRLMQPIGRRNLSASLGMTERVLRSEVQVLKEQNLVHVASSGMTLTEEGTAL
VLALEDFMKEISGLKVLEKQLKETLDLDEVFVVPGDSDESPWVKLEMGRACVTCIKDRLTANNIVAVAGGTTLAAVADMM
QLDCKDLHMLFVPARGGIGEGVELEANTICAKMAQNTMSNYRLLYVPDHVSSEAYASIVTEPSVKEVLELIRSSNIVIHG
IGDALTMARRRNTSEADWLKIQASEAVGEAFGYYFNEQGNVVHKVRTVGMQLEDLQNVSHVVAVAGGSSKAKAIQAVIKQ
GHTSILITDEGAAKQLTKGITL
>Mature_342_residues
MRSWIQNTKKLLPDLLPVMQTRMQILQYIRLMQPIGRRNLSASLGMTERVLRSEVQVLKEQNLVHVASSGMTLTEEGTAL
VLALEDFMKEISGLKVLEKQLKETLDLDEVFVVPGDSDESPWVKLEMGRACVTCIKDRLTANNIVAVAGGTTLAAVADMM
QLDCKDLHMLFVPARGGIGEGVELEANTICAKMAQNTMSNYRLLYVPDHVSSEAYASIVTEPSVKEVLELIRSSNIVIHG
IGDALTMARRRNTSEADWLKIQASEAVGEAFGYYFNEQGNVVHKVRTVGMQLEDLQNVSHVVAVAGGSSKAKAIQAVIKQ
GHTSILITDEGAAKQLTKGITL

Specific function: Unknown

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=252, Percent_Identity=26.984126984127, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 37434; Mature: 37434

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSWIQNTKKLLPDLLPVMQTRMQILQYIRLMQPIGRRNLSASLGMTERVLRSEVQVLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHH
QNLVHVASSGMTLTEEGTALVLALEDFMKEISGLKVLEKQLKETLDLDEVFVVPGDSDES
CCEEEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
PWVKLEMGRACVTCIKDRLTANNIVAVAGGTTLAAVADMMQLDCKDLHMLFVPARGGIGE
CEEEEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCCC
GVELEANTICAKMAQNTMSNYRLLYVPDHVSSEAYASIVTEPSVKEVLELIRSSNIVIHG
CCEECHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEEEE
IGDALTMARRRNTSEADWLKIQASEAVGEAFGYYFNEQGNVVHKVRTVGMQLEDLQNVSH
CCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHH
VVAVAGGSSKAKAIQAVIKQGHTSILITDEGAAKQLTKGITL
EEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCC
>Mature Secondary Structure
MRSWIQNTKKLLPDLLPVMQTRMQILQYIRLMQPIGRRNLSASLGMTERVLRSEVQVLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHH
QNLVHVASSGMTLTEEGTALVLALEDFMKEISGLKVLEKQLKETLDLDEVFVVPGDSDES
CCEEEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
PWVKLEMGRACVTCIKDRLTANNIVAVAGGTTLAAVADMMQLDCKDLHMLFVPARGGIGE
CEEEEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCCC
GVELEANTICAKMAQNTMSNYRLLYVPDHVSSEAYASIVTEPSVKEVLELIRSSNIVIHG
CCEECHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEEEE
IGDALTMARRRNTSEADWLKIQASEAVGEAFGYYFNEQGNVVHKVRTVGMQLEDLQNVSH
CCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHH
VVAVAGGSSKAKAIQAVIKQGHTSILITDEGAAKQLTKGITL
EEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1452037 [H]