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The map label for this gene is nifU [H]

Identifier: 49187838

GI number: 49187838

Start: 4733535

End: 4733966

Strand: Reverse

Name: nifU [H]

Synonym: BAS4848

Alternate gene names: 49187838

Gene position: 4733966-4733535 (Counterclockwise)

Preceding gene: 49187839

Following gene: 49187837

Centisome position: 90.54

GC content: 37.04

Gene sequence:

>432_bases
ATGTCATTTAATAATTTAGATACGTTATATCGTCAAGTTATTATGGATCATTACAAAAATCCTCGTAACCATGGCGTGTT
AGAAGATAGTGTCACTGTTAACTTGAACAATCCAACTTGCGGCGATCGTATTCAACTTACGATGAAAGTAGAAGAAGGTA
TTGTGCAAGAAGCGAAGTTTGAAGGAGAAGGATGTTCTATCTCAATGTCTTCAGCTTCAATGATGACACAAGCAGTAAAA
GGTAAGAAAATTGAAGAGGCACTTCAGCTTTCTAAAATTTTCTCTGACATGATGCTAGGAAAAGAGTACGATGACAGCAT
CGATTTAGGAGATATTGAAGCATTACAAGGCGTATGCAAGTTCCCTGCACGTATTAAATGTGCAACATTAGCGTGGAAAG
CGTTAGAAAAGGGCTTAAACGAAGATAAGTAA

Upstream 100 bases:

>100_bases
GCTTCTTCAACAGCACGTGCGAGCTTCTATTTATATAATACAAAAGAAGAAATTGATACATTTGTTGAATCGCTAATCAA
GACAAAGGAGTATTTCACAA

Downstream 100 bases:

>100_bases
TGTTAAAGGTTCCTAAAAACGAGGTTATCTAAGGAGGGACACACCAACATGGCGAAGCAACTGCCAGATATCGGCGATTA
TAAATATGGTTTCAAAGACA

Product: NifU domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDRIQLTMKVEEGIVQEAKFEGEGCSISMSSASMMTQAVK
GKKIEEALQLSKIFSDMMLGKEYDDSIDLGDIEALQGVCKFPARIKCATLAWKALEKGLNEDK

Sequences:

>Translated_143_residues
MSFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDRIQLTMKVEEGIVQEAKFEGEGCSISMSSASMMTQAVK
GKKIEEALQLSKIFSDMMLGKEYDDSIDLGDIEALQGVCKFPARIKCATLAWKALEKGLNEDK
>Mature_142_residues
SFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDRIQLTMKVEEGIVQEAKFEGEGCSISMSSASMMTQAVKG
KKIEEALQLSKIFSDMMLGKEYDDSIDLGDIEALQGVCKFPARIKCATLAWKALEKGLNEDK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=141, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI24307953, Length=136, Percent_Identity=33.0882352941176, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1788878, Length=83, Percent_Identity=39.7590361445783, Blast_Score=69, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17543474, Length=137, Percent_Identity=32.1167883211679, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324800, Length=88, Percent_Identity=37.5, Blast_Score=68, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6325122, Length=141, Percent_Identity=26.241134751773, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21355597, Length=88, Percent_Identity=43.1818181818182, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 15954; Mature: 15822

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDRIQLTMKVEEGIVQEAKF
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEHHHHHHHHHHC
EGEGCSISMSSASMMTQAVKGKKIEEALQLSKIFSDMMLGKEYDDSIDLGDIEALQGVCK
CCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
FPARIKCATLAWKALEKGLNEDK
CCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SFNNLDTLYRQVIMDHYKNPRNHGVLEDSVTVNLNNPTCGDRIQLTMKVEEGIVQEAKF
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEHHHHHHHHHHC
EGEGCSISMSSASMMTQAVKGKKIEEALQLSKIFSDMMLGKEYDDSIDLGDIEALQGVCK
CCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
FPARIKCATLAWKALEKGLNEDK
CCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]