Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is patB [H]
Identifier: 49187766
GI number: 49187766
Start: 4667363
End: 4668514
Strand: Direct
Name: patB [H]
Synonym: BAS4776
Alternate gene names: 49187766
Gene position: 4667363-4668514 (Clockwise)
Preceding gene: 49187764
Following gene: 49187769
Centisome position: 89.26
GC content: 37.67
Gene sequence:
>1152_bases ATGCAACTATTTCATAAAACAGTCAATCGACGTGGAACTCATAGTATAAAATGGGATACATATAAAAACGAAGAACTTAT CCATGCTTGGATTGCGGATATGGATTTTGAAGTACCACAACCAATTCAAACTGCTTTAAAGAAACGTATCGAGCATCCTA TTTTCGGCTATACACTTCCTCCCGAAAATATTGGCGATATTATTTGTAACTGGACAAAAAAACAGTACAACTGGGATATT CAAAAAGAATGGATTGTCTTTAGCGCCGGAATCGTTCCAGCCCTTAGTACGAGCATACAGGCCTTCACAAAGGAAAACGA ATCCGTTCTCGTACAACCACCTATTTATCCCCCATTTTTCGAAATGGTCACAACAAATAACAGACAATTATGCGTAAGTC CATTACAGAAACAAAATGATACATATGCGATAGACTTCGAGCATTTAGAAAAGCAATTTCAACAAGGCGTCAAACTCATG CTTCTTTGCAGTCCTCACAATCCGATAGGGCGTGTTTGGAAGAAAGAGGAACTAACAAAGCTTGGATCTTTATGTACCAA ATATAATGTAATCGTTGTCGCAGATGAAATTCATTCCGATATTATTTACGCAGATCATACACATACACCGTTCGCTTCTT TATCTGAAGAATTAGCCGCGCGCACGATTACTTGTATGGCTCCGAGTAAAACATTTAATATCGCGGGATTACAAGCATCG ATTATTATCATTCCGAATGAAAAACTCCGTCAAGCCTTTACATCCATCCAATATAGACAAGGCTTCCACGGATTAAATAT ATTCGCCTATACAGCGATGCAAAGTGCCTATACAGAATGTAACGATTGGCTAAATGAAATTCGATTCTATATAGAAGATA ACGCTAAATTCGCTTGTGAATATATTAAAGATCACATACCTACTCTTTCCGTAATGAAGCCAGAAGGTAGCTTTTTATTG TGGATCGATTGTTCTGCCCTAAATCTTTCTCAAGACGAGCGTACTAAATTGCTTGAGGAAAAAGGGAAAATTATCGTTGA ACCTGGTGAGAAATACGGATTAGGCGGCGAAGAACATATTGGAATTAACATTGGCTGTCCAAGATCTGTTTTAGAAGAAA TTTTAAATAGACTGCGCCATACGTTTTCATAA
Upstream 100 bases:
>100_bases ACTTTTTAATACTTTTCTTTATCCTATCACATCAGCTATTCTATAAGAAGAGAGAGAACTTTTATAACTTAACGGTTTTA CAGAAGAAGGGGGCAAACTT
Downstream 100 bases:
>100_bases TAAAAAGGAGGCTATTTGGGACAGCTTCCTTTGTCAACTTTTGTCGGTAAGTCGATATATTTTAAAAATCGCTGATATAT TTTGAGTTACGGTCGATATA
Product: class I/II aminotransferase
Products: NA
Alternate protein names: CBL; Beta-cystathionase; Cysteine lyase [H]
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MQLFHKTVNRRGTHSIKWDTYKNEELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDI QKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLM LLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQAS IIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLL WIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRHTFS
Sequences:
>Translated_383_residues MQLFHKTVNRRGTHSIKWDTYKNEELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDI QKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLM LLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQAS IIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLL WIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRHTFS >Mature_383_residues MQLFHKTVNRRGTHSIKWDTYKNEELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDI QKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLM LLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQAS IIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLL WIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRHTFS
Specific function: Catalyzes the transformation of cystathionine to homocysteine. Also exhibits cysteine desulfhydrase activity in vitro, producing sulfide from cysteine [H]
COG id: COG1168
COG function: function code E; Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. MalY/PatB cystathionine beta-lyase subfamily [H]
Homologues:
Organism=Homo sapiens, GI56713256, Length=187, Percent_Identity=28.8770053475936, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI56713254, Length=181, Percent_Identity=28.7292817679558, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI95147551, Length=261, Percent_Identity=24.904214559387, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI169881279, Length=261, Percent_Identity=24.904214559387, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI169881281, Length=235, Percent_Identity=25.1063829787234, Blast_Score=74, Evalue=2e-13, Organism=Escherichia coli, GI1787909, Length=387, Percent_Identity=31.266149870801, Blast_Score=216, Evalue=3e-57, Organism=Escherichia coli, GI1788627, Length=330, Percent_Identity=25.1515151515152, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1786816, Length=307, Percent_Identity=19.5439739413681, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567663, Length=382, Percent_Identity=22.5130890052356, Blast_Score=92, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17567369, Length=170, Percent_Identity=27.6470588235294, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71994476, Length=229, Percent_Identity=22.707423580786, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71994472, Length=229, Percent_Identity=22.707423580786, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322401, Length=337, Percent_Identity=25.8160237388724, Blast_Score=97, Evalue=3e-21, Organism=Drosophila melanogaster, GI28573069, Length=195, Percent_Identity=26.1538461538462, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI24646114, Length=195, Percent_Identity=26.1538461538462, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI28573067, Length=195, Percent_Identity=26.1538461538462, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI28573065, Length=195, Percent_Identity=26.1538461538462, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI18859735, Length=313, Percent_Identity=22.0447284345048, Blast_Score=71, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =4.4.1.8 [H]
Molecular weight: Translated: 43997; Mature: 43997
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLFHKTVNRRGTHSIKWDTYKNEELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLP CCHHHHHHCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEECC PENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFF CCCCCHHEECCCCHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHH EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTK HHHCCCCCEEEECCHHCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH LGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQAS HHHHHHHCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHEEEEECCCCEEEEECEEEE IIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACE EEEECCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHEEEEECCCHHHHH YIKDHIPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHI HHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCHHCCCCCCCEE GINIGCPRSVLEEILNRLRHTFS EEECCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MQLFHKTVNRRGTHSIKWDTYKNEELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLP CCHHHHHHCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEECC PENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFF CCCCCHHEECCCCHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHH EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTK HHHCCCCCEEEECCHHCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH LGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQAS HHHHHHHCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHEEEEECCCCEEEEECEEEE IIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACE EEEECCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHEEEEECCCHHHHH YIKDHIPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHI HHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEECCHHCCCCCCCEE GINIGCPRSVLEEILNRLRHTFS EEECCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8497199; 9274030; 9384377 [H]