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The map label for this gene is yndE [H]

Identifier: 49187623

GI number: 49187623

Start: 4525473

End: 4526567

Strand: Direct

Name: yndE [H]

Synonym: BAS4631

Alternate gene names: 49187623

Gene position: 4525473-4526567 (Clockwise)

Preceding gene: 49187622

Following gene: 49187624

Centisome position: 86.55

GC content: 34.43

Gene sequence:

>1095_bases
ATGAGTAAAGTTCAAGAAAAATATCAAATATCTCCTATCTTCGTTTTCTTCTTAATTCACGGTGCACAGTTTGGAGCTGG
CGTTCTCGGCTTCGCTAGAATCATCGCAAAGGCCGCTGGATACGACGGATGGATGGGCGTTCTAATCACAGGACTCTGTA
TCCATCTCCTTATATGGATGATGTATTTTTTATTAAAAGAAACAAATGGAAATTTAATTGATTTACAAAGGCAAACGTTT
GGAAAGTGGATAGGGAATGTCTTTAATATCATTTTTGCAGCTTATTTTTTAATCGTTAGTATTTCCGTTATTCGAACGTA
TGTCGAAATTATTCAAGTATGGATGTTTCCTACCGCTTCCACCTTTATGTTAACACTCTTTTTGTGCTTAGTTAGCTATT
ACATTATCTCTTCTGGATTTCGTGTCATTACTGGCATTTGTGTCATCTCTGTCGGTGGTACAATTGGGTATTTGTTTCTG
AGCCTATTTGTTTTGAAATACTCACATTGGGACAACTTACTCCCTATATTTACACATTCTTTTTCAGACATTTTAAAATC
CGCTCAACTGTCAATCTACAGTATGACCGGTTTTGAGATTTACCTCATGGTGTATCCATTTGTTAAAAAGCCTATGCAAT
CTCATAAATACGCTCAGCTTGGAGCACTATTTTCAAATCTTCTATATCTATTTAGCACCCTTTTAGCCTTTGCATTTTTT
AGTGAAAAACAATTGTTAAAAACGATATGGGCCCAACTTTCTATGACCCAAGTCATTCAATTACCATTTATAGAAAGACT
CGAATATATCGCAATTTCAGGCTATGCACTCGTTATTATTTCAAGTTTTATCCTCCCTTTATGGGCGTCAATGAGAGCAA
CGCATGAAATATTCCGTGTAAAACAAAGAGGTATTTTGATCGCTTTTATCATTATCACTCTCATTATTTCGCAACTTTTA
ACAAACAGACAAGATATTAATAACTTTATTAGTAATGCATCGAAAGTTAGTTTTTGGCTCATTTACGTATACATCCCAAT
CCTATTTATTATTGTGTGGGTGAAAAGAAAATGGAAAAAATCAAAAGCAAATTAA

Upstream 100 bases:

>100_bases
GAGATGTACAAGCAAGGCCACAGCATGTAAAAAAATCAGCAAAAGGAATTTCAACAAAACATAGATCGGACTTTGATGAT
TAAGAAATGAGGTGCATTCG

Downstream 100 bases:

>100_bases
TACTTATTTCTTGTATAGCTCTTTTTAGTTTAACTGGATGTTTACAAAAAAATATTATCGATGATGTACAACTGATTCAA
GGAACCGTTTTTGATACAGC

Product: spore germination protein GerHB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MSKVQEKYQISPIFVFFLIHGAQFGAGVLGFARIIAKAAGYDGWMGVLITGLCIHLLIWMMYFLLKETNGNLIDLQRQTF
GKWIGNVFNIIFAAYFLIVSISVIRTYVEIIQVWMFPTASTFMLTLFLCLVSYYIISSGFRVITGICVISVGGTIGYLFL
SLFVLKYSHWDNLLPIFTHSFSDILKSAQLSIYSMTGFEIYLMVYPFVKKPMQSHKYAQLGALFSNLLYLFSTLLAFAFF
SEKQLLKTIWAQLSMTQVIQLPFIERLEYIAISGYALVIISSFILPLWASMRATHEIFRVKQRGILIAFIIITLIISQLL
TNRQDINNFISNASKVSFWLIYVYIPILFIIVWVKRKWKKSKAN

Sequences:

>Translated_364_residues
MSKVQEKYQISPIFVFFLIHGAQFGAGVLGFARIIAKAAGYDGWMGVLITGLCIHLLIWMMYFLLKETNGNLIDLQRQTF
GKWIGNVFNIIFAAYFLIVSISVIRTYVEIIQVWMFPTASTFMLTLFLCLVSYYIISSGFRVITGICVISVGGTIGYLFL
SLFVLKYSHWDNLLPIFTHSFSDILKSAQLSIYSMTGFEIYLMVYPFVKKPMQSHKYAQLGALFSNLLYLFSTLLAFAFF
SEKQLLKTIWAQLSMTQVIQLPFIERLEYIAISGYALVIISSFILPLWASMRATHEIFRVKQRGILIAFIIITLIISQLL
TNRQDINNFISNASKVSFWLIYVYIPILFIIVWVKRKWKKSKAN
>Mature_363_residues
SKVQEKYQISPIFVFFLIHGAQFGAGVLGFARIIAKAAGYDGWMGVLITGLCIHLLIWMMYFLLKETNGNLIDLQRQTFG
KWIGNVFNIIFAAYFLIVSISVIRTYVEIIQVWMFPTASTFMLTLFLCLVSYYIISSGFRVITGICVISVGGTIGYLFLS
LFVLKYSHWDNLLPIFTHSFSDILKSAQLSIYSMTGFEIYLMVYPFVKKPMQSHKYAQLGALFSNLLYLFSTLLAFAFFS
EKQLLKTIWAQLSMTQVIQLPFIERLEYIAISGYALVIISSFILPLWASMRATHEIFRVKQRGILIAFIIITLIISQLLT
NRQDINNFISNASKVSFWLIYVYIPILFIIVWVKRKWKKSKAN

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 41857; Mature: 41726

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCC
>Mature Secondary Structure 
SKVQEKYQISPIFVFFLIHGAQFGAGVLGFARIIAKAAGYDGWMGVLITGLCIHLLIWM
CCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH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CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]