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The map label for this gene is rnhC [H]

Identifier: 49187446

GI number: 49187446

Start: 4363297

End: 4364232

Strand: Direct

Name: rnhC [H]

Synonym: BAS4451

Alternate gene names: 49187446

Gene position: 4363297-4364232 (Clockwise)

Preceding gene: 49187432

Following gene: 49187447

Centisome position: 83.45

GC content: 39.42

Gene sequence:

>936_bases
ATGTCAAATTCTATCGTAATTCAAACAAATTCTACAGTAATTGAAGACATGAAACAACAATATAAACATTCGCTTAGCCC
GAAAACTCCGCAAGGCGGGATCTTCATGGCAAAGGTGCCATCTTGCACAATTACAGCATATAAATCTGGAAAAGTAATGT
TCCAAGGTGGACGTGCTGAAGCGGAAGCTGCCCGTTGGCAAACTGTCCCCCAAACGCCGAAAATAGCTGTAAAAAAATCT
GTCGATTCACACCGTTATGCACCACCTGCTTCCATCGGTACAATGTCTATCGTGGGGTCAGATGAAGTGGGTACTGGTGA
TTTCTTCGGACCGATGACAGTCGTTGCTGTATATGTAGATGCGAAGCAAATTCCATTGCTAAAAGAGCTTGGTGTAAAAG
ACTCTAAAAACTTAAATGACGAACAAATTACTGCCATTGCAAAACAACTTCTACACGTTGTTCCTTACAGCTCTCTCGTT
CTTCATAATGAAAAATATAACGAGCTATTTGATAAAGGAAACAACCAAGGTAAACTAAAAGCTTTACTACATAATAAAGC
TATTACAAACTTATTAGCAAAAATCGCACCTACAAAACCTGAAGGCGTCTTAATCGATCAATTTACACAACCTGATACAT
ACTACAAATATTTAGCAAAACAAAAGCAAGTACAGCGTGAAAATGTTTATTTCGCGACGAAAGGCGAAAGCGTCCATTTA
GCAGTAGCTGCTGCCTCCATTTTAGCCCGTTACTCATTCGTAAAACAATTTAACGAACTAAGCAAAAAAGCTGGTATGCC
GCTTCCAAAAGGTGCAGGTAAACAAGTTGATATCGCCGCCGCTAAATTAATTCAAAAGCTTGGCAAAGAACGATTGCCTG
AGTTTGTGAAACTGCATTTTGCTAATACAGAGAAGGCGTTTCGCTTACTAAAATAG

Upstream 100 bases:

>100_bases
GAATCCTAAAGTTTATCATACCATGAACCTTCATAATATGGAAACAGAAAGAACAATCCGATATGATAAAAATAACAATA
TAAAAAAAGGGGCGACCATT

Downstream 100 bases:

>100_bases
TATCGACAAAAACAGGAGCCTACAAACTCCTGTTTTTTGTTTCACCCTACTATTGTCCTTATAGTTTTGTTATAATTAAA
ATATACAGATTATTCTAACA

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGIFMAKVPSCTITAYKSGKVMFQGGRAEAEAARWQTVPQTPKIAVKKS
VDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLV
LHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHL
AVAAASILARYSFVKQFNELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLK

Sequences:

>Translated_311_residues
MSNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGIFMAKVPSCTITAYKSGKVMFQGGRAEAEAARWQTVPQTPKIAVKKS
VDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLV
LHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHL
AVAAASILARYSFVKQFNELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLK
>Mature_310_residues
SNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGIFMAKVPSCTITAYKSGKVMFQGGRAEAEAARWQTVPQTPKIAVKKSV
DSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVL
HNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHLA
VAAASILARYSFVKQFNELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPEFVKLHFANTEKAFRLLK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 34247; Mature: 34116

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGIFMAKVPSCTITAYKSGKVMFQGGRAE
CCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCEEEEECCCCC
AEAARWQTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVD
HHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHEEEEEC
AKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLK
CHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHEEEECCHHHHHHHCCCCCCHHH
ALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHL
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEECCCEEEE
AVAAASILARYSFVKQFNELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPEFVKLHF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHEECC
ANTEKAFRLLK
CCHHHHHHHCC
>Mature Secondary Structure 
SNSIVIQTNSTVIEDMKQQYKHSLSPKTPQGGIFMAKVPSCTITAYKSGKVMFQGGRAE
CCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCEEEEECCCCC
AEAARWQTVPQTPKIAVKKSVDSHRYAPPASIGTMSIVGSDEVGTGDFFGPMTVVAVYVD
HHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHEEEEEC
AKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNELFDKGNNQGKLK
CHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHEEEECCHHHHHHHCCCCCCHHH
ALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRENVYFATKGESVHL
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEECCCEEEE
AVAAASILARYSFVKQFNELSKKAGMPLPKGAGKQVDIAAAKLIQKLGKERLPEFVKLHF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHEECC
ANTEKAFRLLK
CCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA