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The map label for this gene is udk

Identifier: 49187272

GI number: 49187272

Start: 4186942

End: 4187580

Strand: Reverse

Name: udk

Synonym: BAS4276

Alternate gene names: 49187272

Gene position: 4187580-4186942 (Counterclockwise)

Preceding gene: 49187273

Following gene: 49187271

Centisome position: 80.09

GC content: 35.37

Gene sequence:

>639_bases
ATGGGGACGAATAAGCCTGTTGTAATTGGAATTGCTGGTGGTTCAGGGTCAGGTAAGACAAGTGTAACGAAAGCGATTTT
TGACCATTTTAAAGGTCATTCCATTTTAATCTTAGAGCAAGATTATTATTACAAAGATCAAAGCCATTTACCAATGGAAG
AACGTTTAAAAACAAATTATGATCATCCATTAGCGTTTGATAATGATTTGTTAATTGAACATTTGCAGCAGTTGCTTGCA
TATAAACAAGTAGATAAACCTGTATATGACTATACATTGCATACGCGTTCAGAAGAAATTATTCCAGTTGAGCCGAAAGA
TGTAATCATTTTAGAAGGAATTCTTATTTTAGAAGACCCACGTCTTTGTGAGTTAATGGACATTAAGCTATTCGTTGATA
CAGATGCGGACCTTCGTATCCTGCGCCGCATGCAGCGTGATATTAAAGAACGCGGTCGTACGATGGATTCAGTTATTGAT
CAATATGTAAATGTTGTACGTCCAATGCACAATCAATTTATTGAGCCTTCTAAGAAGTTTGCGGATATTATTATCCCTGA
AGGTGGACAAAACCACGTTGCAATTGATAGTATGGTTACAAAAATTGCAACAATTCTTGAACAAAAAGTAAATTTGTAA

Upstream 100 bases:

>100_bases
GACATCCGTTGCAGATCGTGAAATTCAAAGTGGATCAACCAGTGTATGTGAATAATATGATGCGCAAAAGCATACTTCAA
TAAGAAAGAGTGATAGTCGA

Downstream 100 bases:

>100_bases
TAGCATAGTAAAAGATATACGATAGGAAGGGATTTTTTCCCTTCCTATCGAATACAATGAAACATGCAACCTCATCTATA
TATAGGTGAGGGCATATTTA

Product: uridine kinase

Products: NA

Alternate protein names: Cytidine monophosphokinase; Uridine monophosphokinase

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MGTNKPVVIGIAGGSGSGKTSVTKAIFDHFKGHSILILEQDYYYKDQSHLPMEERLKTNYDHPLAFDNDLLIEHLQQLLA
YKQVDKPVYDYTLHTRSEEIIPVEPKDVIILEGILILEDPRLCELMDIKLFVDTDADLRILRRMQRDIKERGRTMDSVID
QYVNVVRPMHNQFIEPSKKFADIIIPEGGQNHVAIDSMVTKIATILEQKVNL

Sequences:

>Translated_212_residues
MGTNKPVVIGIAGGSGSGKTSVTKAIFDHFKGHSILILEQDYYYKDQSHLPMEERLKTNYDHPLAFDNDLLIEHLQQLLA
YKQVDKPVYDYTLHTRSEEIIPVEPKDVIILEGILILEDPRLCELMDIKLFVDTDADLRILRRMQRDIKERGRTMDSVID
QYVNVVRPMHNQFIEPSKKFADIIIPEGGQNHVAIDSMVTKIATILEQKVNL
>Mature_211_residues
GTNKPVVIGIAGGSGSGKTSVTKAIFDHFKGHSILILEQDYYYKDQSHLPMEERLKTNYDHPLAFDNDLLIEHLQQLLAY
KQVDKPVYDYTLHTRSEEIIPVEPKDVIILEGILILEDPRLCELMDIKLFVDTDADLRILRRMQRDIKERGRTMDSVIDQ
YVNVVRPMHNQFIEPSKKFADIIIPEGGQNHVAIDSMVTKIATILEQKVNL

Specific function: Pyrimidine salvage pathway. [C]

COG id: COG0572

COG function: function code F; Uridine kinase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the uridine kinase family

Homologues:

Organism=Homo sapiens, GI301129207, Length=209, Percent_Identity=41.1483253588517, Blast_Score=174, Evalue=4e-44,
Organism=Homo sapiens, GI57863312, Length=209, Percent_Identity=41.1483253588517, Blast_Score=174, Evalue=4e-44,
Organism=Homo sapiens, GI18699734, Length=212, Percent_Identity=41.5094339622642, Blast_Score=174, Evalue=5e-44,
Organism=Homo sapiens, GI13899253, Length=214, Percent_Identity=38.785046728972, Blast_Score=157, Evalue=4e-39,
Organism=Homo sapiens, GI209863022, Length=152, Percent_Identity=36.8421052631579, Blast_Score=106, Evalue=1e-23,
Organism=Escherichia coli, GI87082034, Length=209, Percent_Identity=52.1531100478469, Blast_Score=225, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17539894, Length=206, Percent_Identity=42.2330097087379, Blast_Score=169, Evalue=9e-43,
Organism=Caenorhabditis elegans, GI17539892, Length=206, Percent_Identity=42.2330097087379, Blast_Score=169, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI71981181, Length=204, Percent_Identity=36.7647058823529, Blast_Score=132, Evalue=9e-32,
Organism=Saccharomyces cerevisiae, GI6324339, Length=199, Percent_Identity=33.6683417085427, Blast_Score=108, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6320223, Length=205, Percent_Identity=27.3170731707317, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24649624, Length=215, Percent_Identity=41.8604651162791, Blast_Score=168, Evalue=2e-42,
Organism=Drosophila melanogaster, GI28573516, Length=205, Percent_Identity=41.4634146341463, Blast_Score=167, Evalue=5e-42,
Organism=Drosophila melanogaster, GI28573514, Length=205, Percent_Identity=41.4634146341463, Blast_Score=167, Evalue=5e-42,
Organism=Drosophila melanogaster, GI28573512, Length=205, Percent_Identity=41.4634146341463, Blast_Score=167, Evalue=5e-42,
Organism=Drosophila melanogaster, GI221458995, Length=219, Percent_Identity=40.6392694063927, Blast_Score=167, Evalue=5e-42,
Organism=Drosophila melanogaster, GI45550449, Length=205, Percent_Identity=41.4634146341463, Blast_Score=167, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URK_BACAA (C3P969)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868668.1
- ProteinModelPortal:   C3P969
- EnsemblBacteria:   EBBACT00000129236
- GeneID:   7852302
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4628
- GeneTree:   EBGT00050000002133
- ProtClustDB:   PRK05480
- GO:   GO:0005737
- HAMAP:   MF_00551
- InterPro:   IPR006083
- InterPro:   IPR000764
- PANTHER:   PTHR10285:SF6
- PRINTS:   PR00988
- TIGRFAMs:   TIGR00235

Pfam domain/function: PF00485 PRK

EC number: =2.7.1.48

Molecular weight: Translated: 24312; Mature: 24181

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTNKPVVIGIAGGSGSGKTSVTKAIFDHFKGHSILILEQDYYYKDQSHLPMEERLKTNY
CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCHHHHHHCCC
DHPLAFDNDLLIEHLQQLLAYKQVDKPVYDYTLHTRSEEIIPVEPKDVIILEGILILEDP
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCEEECCCCCEEEEECEEEECCC
RLCELMDIKLFVDTDADLRILRRMQRDIKERGRTMDSVIDQYVNVVRPMHNQFIEPSKKF
CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
ADIIIPEGGQNHVAIDSMVTKIATILEQKVNL
HEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GTNKPVVIGIAGGSGSGKTSVTKAIFDHFKGHSILILEQDYYYKDQSHLPMEERLKTNY
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCHHHHHHCCC
DHPLAFDNDLLIEHLQQLLAYKQVDKPVYDYTLHTRSEEIIPVEPKDVIILEGILILEDP
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCEEECCCCCEEEEECEEEECCC
RLCELMDIKLFVDTDADLRILRRMQRDIKERGRTMDSVIDQYVNVVRPMHNQFIEPSKKF
CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
ADIIIPEGGQNHVAIDSMVTKIATILEQKVNL
HEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA