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The map label for this gene is ydfD [H]

Identifier: 49185496

GI number: 49185496

Start: 2490502

End: 2490834

Strand: Reverse

Name: ydfD [H]

Synonym: BAS2488

Alternate gene names: 49185496

Gene position: 2490834-2490502 (Counterclockwise)

Preceding gene: 49185511

Following gene: 49185495

Centisome position: 47.64

GC content: 34.53

Gene sequence:

>333_bases
ATGACAACTAGTAAAAAACTGCCTAAGTATCGGCAGATAGTAGATTATATGAAAGAAAAAATTGAAAATGGAGAATGGAC
AATTGGAAGTAAGATCCCTAGTCAAAGGCAGTTAGCAAAATTATTTCAAGTAAATCGTAGCACTGTAATAACTGCACTAG
ATGAACTTATGGCTGATGGATTGATTCAAGGGAAAATTGGAGCAGGAACAATTGTAACGAATAATACATGGTCATTATTA
GCAACAAATCCACCACCTGATTGGAGTGAATATGTAAAGGCCGGTATTCATAAACCAAGCAAGTTAATGGTACGAGAAAT
AAATGAAGCATAA

Upstream 100 bases:

>100_bases
CTTTTCATCATATTTAATAGTTGATACAATGTCTTCAACCAGTTTTTTATCGTAAAAACCAACCACTTGGTATTTTTCAA
GTGAACGAAGGAGTTTTTTG

Downstream 100 bases:

>100_bases
GCAAATAACAAGCTTATCCATCTTAGTAAAGGCGAACTTTCTCCTCATCTTTTTCCATTAGAAACGATGCAGTCCATTAT
GAAGAAAGTAAGTGAGGAAT

Product: GntR family transcriptional regulator N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MTTSKKLPKYRQIVDYMKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLL
ATNPPPDWSEYVKAGIHKPSKLMVREINEA

Sequences:

>Translated_110_residues
MTTSKKLPKYRQIVDYMKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLL
ATNPPPDWSEYVKAGIHKPSKLMVREINEA
>Mature_109_residues
TTSKKLPKYRQIVDYMKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADGLIQGKIGAGTIVTNNTWSLLA
TNPPPDWSEYVKAGIHKPSKLMVREINEA

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 12343; Mature: 12212

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSKKLPKYRQIVDYMKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADG
CCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCC
LIQGKIGAGTIVTNNTWSLLATNPPPDWSEYVKAGIHKPSKLMVREINEA
CCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TTSKKLPKYRQIVDYMKEKIENGEWTIGSKIPSQRQLAKLFQVNRSTVITALDELMADG
CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCC
LIQGKIGAGTIVTNNTWSLLATNPPPDWSEYVKAGIHKPSKLMVREINEA
CCCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]