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The map label for this gene is ydfD [H]

Identifier: 49185495

GI number: 49185495

Start: 2489401

End: 2490435

Strand: Reverse

Name: ydfD [H]

Synonym: BAS2487

Alternate gene names: 49185495

Gene position: 2490435-2489401 (Counterclockwise)

Preceding gene: 49185496

Following gene: 49185493

Centisome position: 47.63

GC content: 33.72

Gene sequence:

>1035_bases
ATGCAGTCCATTATGAAGAAAGTAAGTGAGGAATTAGACTATTTTGGATATGAGGAACAAAAAGGGTTTTATCCGTTACG
TGAAGCAATAAGTAAATACGTAAAATCATTTGGAATACATGCATCACCAAGTTCCATATTAATCGTCTCGGGTGCATTAC
AAGCATTGCAATTAATATCAATTGGTCTTTTACATAGAGAGTCAACCATTTTACTTGAACAACCTTCTTACTTATATTCA
CTTCATGTATTTCAATCAGCAAATATAAATCTATCTGGTATATCTATGGATCCTCACGGTATATTACCTAACGAGTTATT
AAAACGAATTAAATACAGTCAGAAGAAAAACATTTTATATTCAATTCCTTGTTTTCAAAATCCAACAGGCATATTAATGT
CTAAAGAGCGGAGAAAAGAAATATTAAAAATATGTGAAAAGGAACAGTTACCTATTATTGAAGATGATATTTACCGCGAG
TTATGGATTGATGCACCGCCCCCAGCTCCTTTAAAATCAAGGGATAAACATGGACATGTATTATATATCGGTAGTCTCTC
TAAGACGCTTACCCCAGGACTTAGAATTGGATGGGTTATCGGTCCAGAACCAGTTATTGATAGATTATCAGATATAAAAA
TGCAAACAGATTATGGATCAAGCTCTTTATCCCAAAGAGTTGCTGCTGAATGGATAAATAAAGGATTTTATGAGGAACAT
CTAGCGAACGTAAGAATTAAACTAAAAGAACGAAGACAAATAATGATACGAGCTTTACATAAGTATTGTGCAGATATTGC
CACCTGGGATATACCTAGTGGTGGATTTTTTATATGGCTAAAGGTAATACCTAGCATTCCGATGAAGAAATTATTTTCAG
AGGCACTATCAAAAGGAGTTCTTTTAAATCCAGGACGTATATATGAAGAAGAATCAGACCGGTATATTCGTTTATCATAT
GGATATGCTTCTTCAGAGCAAATGACTAACGGGATTAAATTGTTGAGTGAATTAATTCGTAAGCTAACGGCATAA

Upstream 100 bases:

>100_bases
CAAGTTAATGGTACGAGAAATAAATGAAGCATAAGCAAATAACAAGCTTATCCATCTTAGTAAAGGCGAACTTTCTCCTC
ATCTTTTTCCATTAGAAACG

Downstream 100 bases:

>100_bases
CAAAAACTCCTCTTTTTCTATAGAGGAGTTTTTATGTATCTTATTTACCACAATCTCATTTCCTGCCCTAATAAAATAAG
TGCTTCATAAGGATCCCCGT

Product: GntR family transcriptional regulator C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MQSIMKKVSEELDYFGYEEQKGFYPLREAISKYVKSFGIHASPSSILIVSGALQALQLISIGLLHRESTILLEQPSYLYS
LHVFQSANINLSGISMDPHGILPNELLKRIKYSQKKNILYSIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRE
LWIDAPPPAPLKSRDKHGHVLYIGSLSKTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRVAAEWINKGFYEEH
LANVRIKLKERRQIMIRALHKYCADIATWDIPSGGFFIWLKVIPSIPMKKLFSEALSKGVLLNPGRIYEEESDRYIRLSY
GYASSEQMTNGIKLLSELIRKLTA

Sequences:

>Translated_344_residues
MQSIMKKVSEELDYFGYEEQKGFYPLREAISKYVKSFGIHASPSSILIVSGALQALQLISIGLLHRESTILLEQPSYLYS
LHVFQSANINLSGISMDPHGILPNELLKRIKYSQKKNILYSIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRE
LWIDAPPPAPLKSRDKHGHVLYIGSLSKTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRVAAEWINKGFYEEH
LANVRIKLKERRQIMIRALHKYCADIATWDIPSGGFFIWLKVIPSIPMKKLFSEALSKGVLLNPGRIYEEESDRYIRLSY
GYASSEQMTNGIKLLSELIRKLTA
>Mature_344_residues
MQSIMKKVSEELDYFGYEEQKGFYPLREAISKYVKSFGIHASPSSILIVSGALQALQLISIGLLHRESTILLEQPSYLYS
LHVFQSANINLSGISMDPHGILPNELLKRIKYSQKKNILYSIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRE
LWIDAPPPAPLKSRDKHGHVLYIGSLSKTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRVAAEWINKGFYEEH
LANVRIKLKERRQIMIRALHKYCADIATWDIPSGGFFIWLKVIPSIPMKKLFSEALSKGVLLNPGRIYEEESDRYIRLSY
GYASSEQMTNGIKLLSELIRKLTA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=325, Percent_Identity=31.0769230769231, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI33469970, Length=325, Percent_Identity=31.0769230769231, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI4507369, Length=229, Percent_Identity=26.6375545851528, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI1787710, Length=322, Percent_Identity=25.4658385093168, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1790797, Length=335, Percent_Identity=25.3731343283582, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788722, Length=329, Percent_Identity=23.7082066869301, Blast_Score=82, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6321236, Length=361, Percent_Identity=24.9307479224377, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321000, Length=271, Percent_Identity=26.9372693726937, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6321929, Length=333, Percent_Identity=21.021021021021, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21356535, Length=355, Percent_Identity=23.943661971831, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI18859735, Length=206, Percent_Identity=26.2135922330097, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 39258; Mature: 39258

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSIMKKVSEELDYFGYEEQKGFYPLREAISKYVKSFGIHASPSSILIVSGALQALQLIS
CHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHH
IGLLHRESTILLEQPSYLYSLHVFQSANINLSGISMDPHGILPNELLKRIKYSQKKNILY
HHHHCCCCEEEEECCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEE
SIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRELWIDAPPPAPLKSRDKHGHV
ECCCCCCCCCCEECHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCE
LYIGSLSKTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRVAAEWINKGFYEEH
EEEECCHHHCCCCCEEEEEECCHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHCCHHHHH
LANVRIKLKERRQIMIRALHKYCADIATWDIPSGGFFIWLKVIPSIPMKKLFSEALSKGV
HHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHCCE
LLNPGRIYEEESDRYIRLSYGYASSEQMTNGIKLLSELIRKLTA
EECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQSIMKKVSEELDYFGYEEQKGFYPLREAISKYVKSFGIHASPSSILIVSGALQALQLIS
CHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHH
IGLLHRESTILLEQPSYLYSLHVFQSANINLSGISMDPHGILPNELLKRIKYSQKKNILY
HHHHCCCCEEEEECCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEE
SIPCFQNPTGILMSKERRKEILKICEKEQLPIIEDDIYRELWIDAPPPAPLKSRDKHGHV
ECCCCCCCCCCEECHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCE
LYIGSLSKTLTPGLRIGWVIGPEPVIDRLSDIKMQTDYGSSSLSQRVAAEWINKGFYEEH
EEEECCHHHCCCCCEEEEEECCHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHCCHHHHH
LANVRIKLKERRQIMIRALHKYCADIATWDIPSGGFFIWLKVIPSIPMKKLFSEALSKGV
HHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHCCE
LLNPGRIYEEESDRYIRLSYGYASSEQMTNGIKLLSELIRKLTA
EECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]