Click here to switch to the map view.

The map label for this gene is ymfD [H]

Identifier: 49184858

GI number: 49184858

Start: 1872587

End: 1873276

Strand: Direct

Name: ymfD [H]

Synonym: BAS1846

Alternate gene names: 49184858

Gene position: 1872587-1873276 (Clockwise)

Preceding gene: 49184857

Following gene: 49184859

Centisome position: 35.81

GC content: 36.96

Gene sequence:

>690_bases
ATGATTATTACAATTTACTCTATCGTAGCCATTCTACTTATACCGATTGCTGGTTATTTATCAGATCGATGGGGGAGAAA
TATGGTAATGGTTCCGAGTTTGCTGATTGCGGCCATAGGAGGAGCGATAACTGGTTGGGTATCTTGGAAAGTTGATAATC
CCTACACTTGGATATTGATTGGTAGAGCGATTCAAGGTATTGGTGCTGCTGGTGCAATGCCAGTTGTTATACCGTGTGTT
GGTGATTTATACAAGGATGAAAAACAAGTTAGTACAGGTTTAGGAATCATAGAAACATCCAATACATTTGGGAAAGTGTT
GAGCCCTATTTTAGGATCTGCTCTTGCTGCCATTGTATGGTTTTTACCATTTTGGGCGATTCCAGTTTTATGCATAGTAT
CAATTGTTTTATTACTTGTTCTAGTAAAGGCAAAGAAACAAGAAGGAGAAGTACCGCCACTTAAAGAGTTTATCAAATCT
ATTGTCGCTACGTTTCGAGAAAAGGGAAGATGGTTGGTGCAATTATTATGCTTATTTTATTCGGAATTCTCTTTTATTTG
TCAACTATATTGGAATCAAAGTATGACATTCATGGTATATGGAAAGGGTGTGTACTTGCGATTCCGTTACTTGTACTGTC
ACTTAGTTCATATATGGCTGGTAAAAAAATTGGAGATAATCAAAATGTGA

Upstream 100 bases:

>100_bases
TTGCATCAGTTCCACTTGTTATGACATTAGGGAATTCAATGCTCATTCCAATCCTGCCGACAATTGAAAAAAATTACATA
TTTCATCGTTTCAAGTATCC

Downstream 100 bases:

>100_bases
TGAAGAAGTGTATTTATATTGGTTTTTTAATGGCTGCTGCATCAGTTATCATTCCTTTATTTATAAAAGGGATTTATTTA
CTACTTCTTTGTCTCGTTAT

Product: transporter protein

Products: Proton [Cytoplasm]; drug [Periplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MIITIYSIVAILLIPIAGYLSDRWGRNMVMVPSLLIAAIGGAITGWVSWKVDNPYTWILIGRAIQGIGAAGAMPVVIPCV
GDLYKDEKQVSTGLGIIETSNTFGKVLSPILGSALAAIVWFLPFWAIPVLCIVSIVLLLVLVKAKKQEGEVPPLKEFIKS
IVATFREKGRWLVQLLCLFYSEFSFICQLYWNQSMTFMVYGKGVYLRFRYLYCHLVHIWLVKKLEIIKM

Sequences:

>Translated_229_residues
MIITIYSIVAILLIPIAGYLSDRWGRNMVMVPSLLIAAIGGAITGWVSWKVDNPYTWILIGRAIQGIGAAGAMPVVIPCV
GDLYKDEKQVSTGLGIIETSNTFGKVLSPILGSALAAIVWFLPFWAIPVLCIVSIVLLLVLVKAKKQEGEVPPLKEFIKS
IVATFREKGRWLVQLLCLFYSEFSFICQLYWNQSMTFMVYGKGVYLRFRYLYCHLVHIWLVKKLEIIKM
>Mature_229_residues
MIITIYSIVAILLIPIAGYLSDRWGRNMVMVPSLLIAAIGGAITGWVSWKVDNPYTWILIGRAIQGIGAAGAMPVVIPCV
GDLYKDEKQVSTGLGIIETSNTFGKVLSPILGSALAAIVWFLPFWAIPVLCIVSIVLLLVLVKAKKQEGEVPPLKEFIKS
IVATFREKGRWLVQLLCLFYSEFSFICQLYWNQSMTFMVYGKGVYLRFRYLYCHLVHIWLVKKLEIIKM

Specific function: Involved in secretion of bacillibactin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001958 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 25734; Mature: 25734

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIITIYSIVAILLIPIAGYLSDRWGRNMVMVPSLLIAAIGGAITGWVSWKVDNPYTWILI
CEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEE
GRAIQGIGAAGAMPVVIPCVGDLYKDEKQVSTGLGIIETSNTFGKVLSPILGSALAAIVW
EHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHH
FLPFWAIPVLCIVSIVLLLVLVKAKKQEGEVPPLKEFIKSIVATFREKGRWLVQLLCLFY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
SEFSFICQLYWNQSMTFMVYGKGVYLRFRYLYCHLVHIWLVKKLEIIKM
HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIITIYSIVAILLIPIAGYLSDRWGRNMVMVPSLLIAAIGGAITGWVSWKVDNPYTWILI
CEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEE
GRAIQGIGAAGAMPVVIPCVGDLYKDEKQVSTGLGIIETSNTFGKVLSPILGSALAAIVW
EHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHH
FLPFWAIPVLCIVSIVLLLVLVKAKKQEGEVPPLKEFIKSIVATFREKGRWLVQLLCLFY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
SEFSFICQLYWNQSMTFMVYGKGVYLRFRYLYCHLVHIWLVKKLEIIKM
HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; drug [Cytoplasm] [C]

Specific reaction: Proton [Periplasm] + drug [Cytoplasm] = Proton [Cytoplasm] + drug [Periplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]