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The map label for this gene is oppC [H]

Identifier: 49183649

GI number: 49183649

Start: 674337

End: 675242

Strand: Reverse

Name: oppC [H]

Synonym: BAS0624

Alternate gene names: 49183649

Gene position: 675242-674337 (Counterclockwise)

Preceding gene: 49183650

Following gene: 49183648

Centisome position: 12.91

GC content: 34.77

Gene sequence:

>906_bases
ATGTTAGCAAATCCTGAAAAACAAACTGAAGTCATTCATTACGAAAAGATCCCTTCTGGTTTCTCCATTATGTGGCGAGA
ATTTCGTAAAGATAAACTAGCAATGTTTTCCCTATTCTTTTTAGCTTTAATATTAATAGCCGTTTATACAACTTCATTTA
TTATGAAACAAGAAGATATCGTTCGAGTCGATCTGTTCGCCATTTATGATCCTCCTTCTGCTGAACATTGGCTAGGAACT
GATTATGGAGGCCGTGATATTTTCGGACAATTAATTATTGGTACACGTAATTCCTTTACAGTTGGTTTAGCCATCACTCT
TTTATCAACTCTTATCGGTCTTACAATGGGACTAATTGCTGGCTATTTTGGAGGAGTTGTCGATAACATCATCATGCGTT
TTATCGATTTTATGATGATTTTACCATTCTTAATGATTGTTATCGTATTTATCTCACTCGTTCCAACTTTCAATATTACT
ACCTTTATTCTCATAATGACCGCTTTCTTATGGGTCGGAAAAGCAAGACTTATACGCTCTAAAGTATTAACGGAGAAAGA
ACTTGATTACGTATCTGCATCTAAAACATTAGGAACACCAAATTGGAAGATTATCTTCCAACAAATATTACCTAATTTAA
GTTCTATTATTATCGTAAATATTACATTAAATCTTGCTGGTAACATCGGGATTGAATCTAGTTTGACTTACTTAGGTTTT
GGTCTACCAGAAAGTACACCGAGTCTTGGTACACTTGTAAGTTATGCAACAAACCCAGATGTATTGCAAGAAAAATGGTG
GATTTGGTTACCCGCATCAATCATGATTTTAGTGTTGATGCTGTGTATAAATTTTATTGGTCAAGCGTTAAAGCGTGCGG
CTGATGCGAGACAAAGAAAAGGTTAA

Upstream 100 bases:

>100_bases
TACTGGATTCGCAACGCTACTCGGGACTCTTCTTTCCGATATTATTCTAAGCATCGTTGATCCACGTATTCGTATTGATT
AATGGAGGTGAAGAAACGTT

Downstream 100 bases:

>100_bases
GGGGTGGAGAAGTTATGAACAAACCAAAATTGTACAAAGTATTAAGTACACTTGCTGCTTCAACATTATTACTATCTGCA
TGTGGGGGTGCTGATAGCGG

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLANPEKQTEVIHYEKIPSGFSIMWREFRKDKLAMFSLFFLALILIAVYTTSFIMKQEDIVRVDLFAIYDPPSAEHWLGT
DYGGRDIFGQLIIGTRNSFTVGLAITLLSTLIGLTMGLIAGYFGGVVDNIIMRFIDFMMILPFLMIVIVFISLVPTFNIT
TFILIMTAFLWVGKARLIRSKVLTEKELDYVSASKTLGTPNWKIIFQQILPNLSSIIIVNITLNLAGNIGIESSLTYLGF
GLPESTPSLGTLVSYATNPDVLQEKWWIWLPASIMILVLMLCINFIGQALKRAADARQRKG

Sequences:

>Translated_301_residues
MLANPEKQTEVIHYEKIPSGFSIMWREFRKDKLAMFSLFFLALILIAVYTTSFIMKQEDIVRVDLFAIYDPPSAEHWLGT
DYGGRDIFGQLIIGTRNSFTVGLAITLLSTLIGLTMGLIAGYFGGVVDNIIMRFIDFMMILPFLMIVIVFISLVPTFNIT
TFILIMTAFLWVGKARLIRSKVLTEKELDYVSASKTLGTPNWKIIFQQILPNLSSIIIVNITLNLAGNIGIESSLTYLGF
GLPESTPSLGTLVSYATNPDVLQEKWWIWLPASIMILVLMLCINFIGQALKRAADARQRKG
>Mature_301_residues
MLANPEKQTEVIHYEKIPSGFSIMWREFRKDKLAMFSLFFLALILIAVYTTSFIMKQEDIVRVDLFAIYDPPSAEHWLGT
DYGGRDIFGQLIIGTRNSFTVGLAITLLSTLIGLTMGLIAGYFGGVVDNIIMRFIDFMMILPFLMIVIVFISLVPTFNIT
TFILIMTAFLWVGKARLIRSKVLTEKELDYVSASKTLGTPNWKIIFQQILPNLSSIIIVNITLNLAGNIGIESSLTYLGF
GLPESTPSLGTLVSYATNPDVLQEKWWIWLPASIMILVLMLCINFIGQALKRAADARQRKG

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=283, Percent_Identity=26.8551236749117, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787760, Length=296, Percent_Identity=29.3918918918919, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1788505, Length=229, Percent_Identity=34.061135371179, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789964, Length=244, Percent_Identity=36.4754098360656, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787498, Length=305, Percent_Identity=29.5081967213115, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=28.5123966942149, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787549, Length=296, Percent_Identity=27.3648648648649, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33806; Mature: 33806

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLANPEKQTEVIHYEKIPSGFSIMWREFRKDKLAMFSLFFLALILIAVYTTSFIMKQEDI
CCCCCCHHHHHEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
VRVDLFAIYDPPSAEHWLGTDYGGRDIFGQLIIGTRNSFTVGLAITLLSTLIGLTMGLIA
EEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GYFGGVVDNIIMRFIDFMMILPFLMIVIVFISLVPTFNITTFILIMTAFLWVGKARLIRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KVLTEKELDYVSASKTLGTPNWKIIFQQILPNLSSIIIVNITLNLAGNIGIESSLTYLGF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHCC
GLPESTPSLGTLVSYATNPDVLQEKWWIWLPASIMILVLMLCINFIGQALKRAADARQRK
CCCCCCCCHHHHHHHCCCCHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure
MLANPEKQTEVIHYEKIPSGFSIMWREFRKDKLAMFSLFFLALILIAVYTTSFIMKQEDI
CCCCCCHHHHHEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
VRVDLFAIYDPPSAEHWLGTDYGGRDIFGQLIIGTRNSFTVGLAITLLSTLIGLTMGLIA
EEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GYFGGVVDNIIMRFIDFMMILPFLMIVIVFISLVPTFNITTFILIMTAFLWVGKARLIRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KVLTEKELDYVSASKTLGTPNWKIIFQQILPNLSSIIIVNITLNLAGNIGIESSLTYLGF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCHHHHCC
GLPESTPSLGTLVSYATNPDVLQEKWWIWLPASIMILVLMLCINFIGQALKRAADARQRK
CCCCCCCCHHHHHHHCCCCHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]