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The map label for this gene is oppA [H]

Identifier: 49183648

GI number: 49183648

Start: 672541

End: 674322

Strand: Reverse

Name: oppA [H]

Synonym: BAS0623

Alternate gene names: 49183648

Gene position: 674322-672541 (Counterclockwise)

Preceding gene: 49183649

Following gene: 49183643

Centisome position: 12.9

GC content: 33.67

Gene sequence:

>1782_bases
ATGAACAAACCAAAATTGTACAAAGTATTAAGTACACTTGCTGCTTCAACATTATTACTATCTGCATGTGGGGGTGCTGA
TAGCGGTAGCAAAAAAACAAATACGAAAAAAGTAGAAACAAATAAATTTAGTGCTGCTGTAAAAAATGATGGTAAAGAAA
TTAAAGACGGATCATTAACTTATGGACTCGTTTCAAATTCACCTTTCGCTGGTGTTTTAAGTAGAGTATTGTATGAAGTT
GCTCCAGATTCAGAAATTATGGATTTCTTTGATGAAGGTTTATTAGCTTCAGATAAAAACTGGGAAATCACAAATGACGG
TGCTGCAACGTATACAATTTCTGAAGATAAAAAAACAATTACTATTAAGATTAAAGATAATGTAAAATGGCACGATGGTA
ACCCTGTAACCGCTGAGGATTTAGAATATTCTTATTTAATCATTGGTAATAGTAAATATACAGGTATCCGTTACGATACA
CAAATGCAAATGATTGAAGGTATGGAAGAATATCACGCTGGAAAAGCTGACAAAATCTCTGGTATTAAAGTAGTCGACCC
AAAAACAATTTCGATTACTTATAAAGAAGTAAACCCTTCACTGAAAACTGGTATTTGGACATATCCTACACCTAAAAAAT
ATTTAGGTGATGTACCAATTGAAAAACTGGCTGAATCTGATAAGATCCGTCAAAATCCAATTGGATTCGGACCATTTAAA
GTGAAGAAAATTGTTCCTGGTGAATCAGTTGAGTATGAGCGCTTCGATGATTACTGGGCTGGCAAACCTAAACTAAAAAA
TGTAACATTAAAAGTTGTAAATCCATCTATTGTTAGTGCATCTCTGAAAAAAGGTGATATTGATATTGCATCAATTACTG
CTGATCAATATCCAAACGTAAGTAAATTAAAAAATACACAACTAGTAGGAAAAACTGCGCTTGCTTACACTTATATCGGA
TTTAAATTTGGACATATGGACAAAGCAAAGAATGAAGCTGTAATGGATAACGATAAGTTCAAAGATGTTCGTTTACGTCA
AGCAATGGCTTATGCAATTGATAGAGAAAAATTAGGAGAAAAAGTATATCACGGACTTCGTGTTCCAGCTAACTCTCCAA
TTCCACCATCTATGCCAAAGTACCATAATAACAATGCTGGCGCATATAACTTAGATGTAGATAAAGCGAAAAAACTATTA
GATGAAGCTGGCTATAAAGATAAAAATGGTGACGGATTCCGTGAAGATCCAAAAGGTAATGAATTTAAAATTAACTTCTT
AGCTAGTAACGGTAGTGAAACAAGTGAACCACTGGCTAAATTCTATATCCAATCTTGGAAAGATATCGGCTTAAAAGTAG
AACTTGTTGATGGACGCTTACATGAATTTAATGCTATGCGTGAAATGATTAAAAAAGATGATCCAAAGGTTGATATTTTC
TCTGGTGCTTGGAACACTGGTTCTGATCCTGACCTTTCTGGTCTATGGGGTAAAAATGCTGGTTTTAACTATCAGCGCTG
GGTAAATGATGAAAATACAAAGTTATTAGATGCTGGATTATCAGAAAAAGCTACTGATGAAAAATATCGTAAAGAAGTAT
ACGATAAATGGCAAAAATTAATTCATGACGAAGCACCGATGATTCCAATTCATTACACATTTGATTTAACAGGTGTTAAT
AAGCGCGTAAAAGATTTTGATGTCAATGCTGAAGTGAATCAAATAACTTCACATTGGAAAGACGTTACTGTAACAAGTGA
GAAGCCAGAAGTAGAAAAATAA

Upstream 100 bases:

>100_bases
TCATGATTTTAGTGTTGATGCTGTGTATAAATTTTATTGGTCAAGCGTTAAAGCGTGCGGCTGATGCGAGACAAAGAAAA
GGTTAAGGGGTGGAGAAGTT

Downstream 100 bases:

>100_bases
TCATAAAAATAGCTCTTAGCATTTACTTACTGCTAAGAGCTATTTTTTATTTATAATCCTTCTCTTACTATTTATAACAA
CCAATTCCTTCCCGACTCTA

Product: oligopeptide ABC transporter oligopeptide-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MNKPKLYKVLSTLAASTLLLSACGGADSGSKKTNTKKVETNKFSAAVKNDGKEIKDGSLTYGLVSNSPFAGVLSRVLYEV
APDSEIMDFFDEGLLASDKNWEITNDGAATYTISEDKKTITIKIKDNVKWHDGNPVTAEDLEYSYLIIGNSKYTGIRYDT
QMQMIEGMEEYHAGKADKISGIKVVDPKTISITYKEVNPSLKTGIWTYPTPKKYLGDVPIEKLAESDKIRQNPIGFGPFK
VKKIVPGESVEYERFDDYWAGKPKLKNVTLKVVNPSIVSASLKKGDIDIASITADQYPNVSKLKNTQLVGKTALAYTYIG
FKFGHMDKAKNEAVMDNDKFKDVRLRQAMAYAIDREKLGEKVYHGLRVPANSPIPPSMPKYHNNNAGAYNLDVDKAKKLL
DEAGYKDKNGDGFREDPKGNEFKINFLASNGSETSEPLAKFYIQSWKDIGLKVELVDGRLHEFNAMREMIKKDDPKVDIF
SGAWNTGSDPDLSGLWGKNAGFNYQRWVNDENTKLLDAGLSEKATDEKYRKEVYDKWQKLIHDEAPMIPIHYTFDLTGVN
KRVKDFDVNAEVNQITSHWKDVTVTSEKPEVEK

Sequences:

>Translated_593_residues
MNKPKLYKVLSTLAASTLLLSACGGADSGSKKTNTKKVETNKFSAAVKNDGKEIKDGSLTYGLVSNSPFAGVLSRVLYEV
APDSEIMDFFDEGLLASDKNWEITNDGAATYTISEDKKTITIKIKDNVKWHDGNPVTAEDLEYSYLIIGNSKYTGIRYDT
QMQMIEGMEEYHAGKADKISGIKVVDPKTISITYKEVNPSLKTGIWTYPTPKKYLGDVPIEKLAESDKIRQNPIGFGPFK
VKKIVPGESVEYERFDDYWAGKPKLKNVTLKVVNPSIVSASLKKGDIDIASITADQYPNVSKLKNTQLVGKTALAYTYIG
FKFGHMDKAKNEAVMDNDKFKDVRLRQAMAYAIDREKLGEKVYHGLRVPANSPIPPSMPKYHNNNAGAYNLDVDKAKKLL
DEAGYKDKNGDGFREDPKGNEFKINFLASNGSETSEPLAKFYIQSWKDIGLKVELVDGRLHEFNAMREMIKKDDPKVDIF
SGAWNTGSDPDLSGLWGKNAGFNYQRWVNDENTKLLDAGLSEKATDEKYRKEVYDKWQKLIHDEAPMIPIHYTFDLTGVN
KRVKDFDVNAEVNQITSHWKDVTVTSEKPEVEK
>Mature_593_residues
MNKPKLYKVLSTLAASTLLLSACGGADSGSKKTNTKKVETNKFSAAVKNDGKEIKDGSLTYGLVSNSPFAGVLSRVLYEV
APDSEIMDFFDEGLLASDKNWEITNDGAATYTISEDKKTITIKIKDNVKWHDGNPVTAEDLEYSYLIIGNSKYTGIRYDT
QMQMIEGMEEYHAGKADKISGIKVVDPKTISITYKEVNPSLKTGIWTYPTPKKYLGDVPIEKLAESDKIRQNPIGFGPFK
VKKIVPGESVEYERFDDYWAGKPKLKNVTLKVVNPSIVSASLKKGDIDIASITADQYPNVSKLKNTQLVGKTALAYTYIG
FKFGHMDKAKNEAVMDNDKFKDVRLRQAMAYAIDREKLGEKVYHGLRVPANSPIPPSMPKYHNNNAGAYNLDVDKAKKLL
DEAGYKDKNGDGFREDPKGNEFKINFLASNGSETSEPLAKFYIQSWKDIGLKVELVDGRLHEFNAMREMIKKDDPKVDIF
SGAWNTGSDPDLSGLWGKNAGFNYQRWVNDENTKLLDAGLSEKATDEKYRKEVYDKWQKLIHDEAPMIPIHYTFDLTGVN
KRVKDFDVNAEVNQITSHWKDVTVTSEKPEVEK

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=496, Percent_Identity=25.8064516129032, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1787052, Length=471, Percent_Identity=24.203821656051, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1789887, Length=454, Percent_Identity=24.2290748898678, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789397, Length=484, Percent_Identity=24.7933884297521, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787495, Length=494, Percent_Identity=25.9109311740891, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787762, Length=492, Percent_Identity=24.7967479674797, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081878, Length=514, Percent_Identity=24.9027237354086, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87082063, Length=277, Percent_Identity=23.1046931407942, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787551, Length=427, Percent_Identity=21.5456674473068, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 66472; Mature: 66472

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPKLYKVLSTLAASTLLLSACGGADSGSKKTNTKKVETNKFSAAVKNDGKEIKDGSLT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCCCEE
YGLVSNSPFAGVLSRVLYEVAPDSEIMDFFDEGLLASDKNWEITNDGAATYTISEDKKTI
EEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCCCEEEEEECCCEEE
TIKIKDNVKWHDGNPVTAEDLEYSYLIIGNSKYTGIRYDTQMQMIEGMEEYHAGKADKIS
EEEEECCEEEECCCCCCCCCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHCCCCCCCCC
GIKVVDPKTISITYKEVNPSLKTGIWTYPTPKKYLGDVPIEKLAESDKIRQNPIGFGPFK
CEEEECCCEEEEEEEECCCCHHCCEECCCCCHHHHCCCCHHHHHCCCCHHCCCCCCCCEE
VKKIVPGESVEYERFDDYWAGKPKLKNVTLKVVNPSIVSASLKKGDIDIASITADQYPNV
EEEECCCCCCCHHCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCEEEEEEECCCCCCH
SKLKNTQLVGKTALAYTYIGFKFGHMDKAKNEAVMDNDKFKDVRLRQAMAYAIDREKLGE
HHHCCCHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KVYHGLRVPANSPIPPSMPKYHNNNAGAYNLDVDKAKKLLDEAGYKDKNGDGFREDPKGN
HHHCCEECCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
EFKINFLASNGSETSEPLAKFYIQSWKDIGLKVELVDGRLHEFNAMREMIKKDDPKVDIF
EEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE
SGAWNTGSDPDLSGLWGKNAGFNYQRWVNDENTKLLDAGLSEKATDEKYRKEVYDKWQKL
ECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
IHDEAPMIPIHYTFDLTGVNKRVKDFDVNAEVNQITSHWKDVTVTSEKPEVEK
HHCCCCEEEEEEEEEECCCCCCHHEECCCCHHHHHHHCCCCEEEECCCCCCCC
>Mature Secondary Structure
MNKPKLYKVLSTLAASTLLLSACGGADSGSKKTNTKKVETNKFSAAVKNDGKEIKDGSLT
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCCCEE
YGLVSNSPFAGVLSRVLYEVAPDSEIMDFFDEGLLASDKNWEITNDGAATYTISEDKKTI
EEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCEEECCCCEEEEEECCCEEE
TIKIKDNVKWHDGNPVTAEDLEYSYLIIGNSKYTGIRYDTQMQMIEGMEEYHAGKADKIS
EEEEECCEEEECCCCCCCCCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHCCCCCCCCC
GIKVVDPKTISITYKEVNPSLKTGIWTYPTPKKYLGDVPIEKLAESDKIRQNPIGFGPFK
CEEEECCCEEEEEEEECCCCHHCCEECCCCCHHHHCCCCHHHHHCCCCHHCCCCCCCCEE
VKKIVPGESVEYERFDDYWAGKPKLKNVTLKVVNPSIVSASLKKGDIDIASITADQYPNV
EEEECCCCCCCHHCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCEEEEEEECCCCCCH
SKLKNTQLVGKTALAYTYIGFKFGHMDKAKNEAVMDNDKFKDVRLRQAMAYAIDREKLGE
HHHCCCHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KVYHGLRVPANSPIPPSMPKYHNNNAGAYNLDVDKAKKLLDEAGYKDKNGDGFREDPKGN
HHHCCEECCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
EFKINFLASNGSETSEPLAKFYIQSWKDIGLKVELVDGRLHEFNAMREMIKKDDPKVDIF
EEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE
SGAWNTGSDPDLSGLWGKNAGFNYQRWVNDENTKLLDAGLSEKATDEKYRKEVYDKWQKL
ECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
IHDEAPMIPIHYTFDLTGVNKRVKDFDVNAEVNQITSHWKDVTVTSEKPEVEK
HHCCCCEEEEEEEEEECCCCCCHHEECCCCHHHHHHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8244921 [H]