Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is dppE [H]
Identifier: 49183229
GI number: 49183229
Start: 195309
End: 196949
Strand: Reverse
Name: dppE [H]
Synonym: BAS0196
Alternate gene names: 49183229
Gene position: 196949-195309 (Counterclockwise)
Preceding gene: 49183230
Following gene: 49183228
Centisome position: 3.77
GC content: 35.34
Gene sequence:
>1641_bases ATGAAAAAGAAGTTTGTACCCGGTATTGCATCAGTTGTAGGAGTAAGTATTTTATTAACTGGTTGCGGTAGTTATAAAAA CGAAGCAAGCGGAGCAAATGCAAAAGACGAGGCACCTAGTAAACAGGTTTTAAACTTATCTTCACCTACTGAAATACGAA CAATGGATACAGCTCGTGCTACAGATACTGATTCTGGTCAAGTAATGAGAAACGTATTTGAAGGTTTGTATAATCTTGGT GAAGGTAACAAACCTATTCCTGGTGTTGCAAAATCTCATGAAGTAAGTGGTGATAAAACGAAATACACATTCCACCTGCG AGATTCAAAATGGTCAAACGGTACTCCTGTTACAGCGAAAGATTTTGTCTTCGCTTGGCAAAGAGCTGTCGATCCAGCAA CAGCCTCTGAATATGCATTTCTATTCTTTGATATTAAAAACGCAACAAAAATTAATAACAAAGAACTTCCAGCCGACCAA CTTGGTGTAAAAGCAGTTGATGACCATACGTTTGAGGTAGAATTAGAGCGTCCTGTTCCGTATTTTATTAGCTTAACAGC GTTCCCAACATTTCTACCAATTAACGAGGAATTCTTTAAAGCACAAGGTGATAAGTACGCTTTAGAAGATAATACAATCT TGTATAATGGAGCTTTTACACTAAGCGATTGGAAGCATGAACAAAGCTTTAAATTCAAGAAAAACCCTACCTATTGGGAT AAAGATACTGTCAAACTAGAAGAAATCAATTTTAACGTTGTAAAAGAAAAATCAACAGAAGTAAACTTATTCGAATCAAA ACAATTAGACCGTATAAAATTAACATCTGATTTCGTTGATAAATATAAAAAAGATGCAAACTTTAAAGAACGCCCGAACG TAGGCGTACAATTTTTACGTATGAATCAACAAAACAAAGTACTGCAAAACGTTTCTGCACGCCAAGCAATCGATCAAACA ATTGATCGAAAATCCTTTGTAAATACGTTATTAAATGATGGCTCTACACCAACCTTTGGTCTCGTCCCAAAAAACTTTGC AAAAGGGCCTGATGGAAAGGACTTCCGTACTATAAACGGAGATTTAACCAAAGTTGATACAAAATCTGCACAAGAGTTAT GGAAAAAGGCAAAACAAGAGCTTGGTTCTGAAAAGATTACATTAGAATTATTAACAAGTGATGCTGACCTTGATAAGAAA ACGGGTGAGTTCTTAAAAGGACAACTAGAAAAGAATTTAGATGGATTAACAGTAAATGTGAAACCACAACCACGTAAACA ACAAGTTTCACTTTTATTAAAAGGTGACTATGAAATCGGTATTGATGGCTGGAGCCCTGACTTTGCTGATCCAATTACAT TCCTTGAATTGTTTACAACGAATAATCCATACAACTTAGATCATTACTCTAATAAGGAATTCGATAAAACAATTGAAAAG GTTAAAACGACTTTAGCTGGTGATGAAAAAGCTCGATGGGAAGCATTACTAGCATCCGAGAAAATATTATTTAAAGACTC CGTTATCGCTCCTCTTTACCAGAAAGGCGAATCTTATTTAGAACGTTCTTATGTGAAAGGAATTGTCCAAGTAGACTTTG CAGGTCAATTAAACTTCAAATGGGCACAAATTGAAAAATAA
Upstream 100 bases:
>100_bases TGTACGTAAAAATCCCTCTTTCTCAATACGAAAAGAGGGATTTTTTATTTTTCATTTCCCTCATCATCATCCAAACTTAA TTATTTAGGAGGAAAATCAA
Downstream 100 bases:
>100_bases AAGACAACCTGAATTGAAGTTTTTCTATCTACACCAATTGTTTTATTGAAAAAATGTACTAAAAGCGGGTTTCTCAATAA GAGAAAATCCGCTTTTTTAA
Product: oligopeptide ABC transporter oligopeptide-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 546; Mature: 546
Protein sequence:
>546_residues MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG EGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTINGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK TGEFLKGQLEKNLDGLTVNVKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAQIEK
Sequences:
>Translated_546_residues MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG EGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTINGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK TGEFLKGQLEKNLDGLTVNVKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAQIEK >Mature_546_residues MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG EGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTINGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK TGEFLKGQLEKNLDGLTVNVKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAQIEK
Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787495, Length=498, Percent_Identity=31.1244979919679, Blast_Score=229, Evalue=3e-61, Organism=Escherichia coli, GI87081878, Length=531, Percent_Identity=29.9435028248588, Blast_Score=207, Evalue=1e-54, Organism=Escherichia coli, GI1789397, Length=493, Percent_Identity=28.1947261663286, Blast_Score=195, Evalue=6e-51, Organism=Escherichia coli, GI1787762, Length=507, Percent_Identity=25.4437869822485, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1787052, Length=473, Percent_Identity=24.9471458773784, Blast_Score=93, Evalue=5e-20, Organism=Escherichia coli, GI1789966, Length=486, Percent_Identity=23.0452674897119, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 61606; Mature: 61606
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARA CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCEEEECCCCC TDTDSGQVMRNVFEGLYNLGEGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAK CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHH DFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQLGVKAVDDHTFEVELERPVP HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCEEECCCEEEEEECCCCC YFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD EEEEEECCCEECCCCHHHHHCCCCEEEECCCEEEEECEEEECCCCCCCCCEECCCCCCCC KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLR CCCEEEEECCEEEEECCCCEEEEECCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEE MNQQNKVLQNVSARQAIDQTIDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTING ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCCEEEECC DLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKKTGEFLKGQLEKNLDGLTVNV CEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE KPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK CCCCCHHEEEEEEECCEEEECCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCHHHHHHHH VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFK HHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEE WAQIEK EEECCC >Mature Secondary Structure MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARA CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCEEEECCCCC TDTDSGQVMRNVFEGLYNLGEGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAK CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHH DFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQLGVKAVDDHTFEVELERPVP HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCEEECCCEEEEEECCCCC YFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD EEEEEECCCEECCCCHHHHHCCCCEEEECCCEEEEECEEEECCCCCCCCCEECCCCCCCC KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLR CCCEEEEECCEEEEECCCCEEEEECCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEE MNQQNKVLQNVSARQAIDQTIDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTING ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCCEEEECC DLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKKTGEFLKGQLEKNLDGLTVNV CEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE KPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK CCCCCHHEEEEEEECCEEEECCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCHHHHHHHH VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFK HHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEE WAQIEK EEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1766370; 9384377 [H]