Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is truA
Identifier: 49183176
GI number: 49183176
Start: 138254
End: 138997
Strand: Direct
Name: truA
Synonym: BAS0142
Alternate gene names: 49183176
Gene position: 138254-138997 (Clockwise)
Preceding gene: 49183175
Following gene: 49183177
Centisome position: 2.64
GC content: 36.83
Gene sequence:
>744_bases ATGGATAGAATAAAATGTACGGTTGCATATGATGGCATGCATTTTTGTGGTTATCAAATTCAACCGCAGCATCGTACTGT TCAACAAGAGATAGAGAAGGCTTTACAGAAATTGCATAAAGGAGAACTTGTTCGTGTTCAGGCATCAGGCAGAACGGATT CTACCGTTCACGCTAAAGGACAAGTGATACACTTTGATACACCGTTGTCTCTTGAAGAGTGGCAATGGAGTAATGCATTA AACACAATGCTACCAGATGATATTGTTATCACACAGGTAGAGAAAAAAACAGAAGAATTTCATGCTCGATACGGTGTTGA GAGAAAAGAATATCGTTATCGTGTACTAGTATCAAAGACTGCGGATGTATTCCGTAGAAATTATGTATATCAATATCCAT ATCCACTCGAAGTAAACTCTATAAGAAAAGCGATCCCTTATTTTATTGGAACGCATGATTTCACTTCTTTTTGTTCGGCA AAAACTGACAAAAAAGATAAAGTGAGAACAATTTATGAAATCGAGCTAATTGAGCAAGACGATGAATTAATTTTTCGTTT TGTAGGGAATGGATTTTTATATAATATGGTCAGGATTATTGTTGGTACGTTACTTAACGTAGGCCAAGGAAAGCTTGATC CGGATAGCATTCCAGAGATTTTAGCGAAACAAAATCGTCAGTTTGCTGGAAAGATGGCTCCTGGTCATGGGCTTTATTTA TGGCAGGTAAACTATAACAACTAA
Upstream 100 bases:
>100_bases GGCAACTACGCTGGAAAACAAGCGATACAGTAACGATTATAAGCTTACTTTGTTTAGCTTGTATTTTGGCATGGGTGCGA TCGTAATGGAGAATAGAGAA
Downstream 100 bases:
>100_bases TCCTGGTGTAACATTTGCTTGACATTAGAAACTCAAAAGTATATCATAACATATGGTATTGTTTCTAAAACCACGATTAG CCCCGGAAGGAAATCGTGTT
Product: tRNA pseudouridine synthase A
Products: NA
Alternate protein names: tRNA pseudouridylate synthase I 1; tRNA-uridine isomerase I 1
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEEWQWSNAL NTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSA KTDKKDKVRTIYEIELIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYL WQVNYNN
Sequences:
>Translated_247_residues MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEEWQWSNAL NTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSA KTDKKDKVRTIYEIELIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYL WQVNYNN >Mature_247_residues MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEEWQWSNAL NTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSA KTDKKDKVRTIYEIELIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYL WQVNYNN
Specific function: Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
COG id: COG0101
COG function: function code J; Pseudouridylate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tRNA pseudouridine synthase truA family
Homologues:
Organism=Homo sapiens, GI23503259, Length=249, Percent_Identity=30.5220883534137, Blast_Score=102, Evalue=5e-22, Organism=Escherichia coli, GI1788657, Length=243, Percent_Identity=32.0987654320988, Blast_Score=145, Evalue=2e-36, Organism=Saccharomyces cerevisiae, GI6321112, Length=239, Percent_Identity=26.3598326359833, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007752, Length=301, Percent_Identity=25.2491694352159, Blast_Score=72, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): TRUA1_BACAN (Q6I4Q2)
Other databases:
- EMBL: AE016879 - EMBL: AE017334 - EMBL: AE017225 - RefSeq: YP_026428.1 - ProteinModelPortal: Q6I4Q2 - SMR: Q6I4Q2 - EnsemblBacteria: EBBACT00000013723 - EnsemblBacteria: EBBACT00000023705 - EnsemblBacteria: EBBACT00000082830 - GeneID: 2847886 - GenomeReviews: AE016879_GR - GenomeReviews: AE017225_GR - GenomeReviews: AE017334_GR - KEGG: ban:BA_0142 - TIGR: BA_0142 - TIGR: GBAA_0142 - GeneTree: EBGT00050000002107 - HOGENOM: HBG621020 - OMA: QSKTPFR - ProtClustDB: PRK00021 - BioCyc: BANT260799:BAS0142-MONOMER - BRENDA: 5.4.99.12 - HAMAP: MF_00171 - InterPro: IPR020103 - InterPro: IPR001406 - InterPro: IPR020097 - InterPro: IPR020095 - InterPro: IPR020094 - Gene3D: G3DSA:3.30.70.580 - Gene3D: G3DSA:3.30.70.660 - PANTHER: PTHR11142 - PIRSF: PIRSF001430 - TIGRFAMs: TIGR00071
Pfam domain/function: PF01416 PseudoU_synth_1; SSF55120 PsdUridine_synth_cat_dom
EC number: =5.4.99.12
Molecular weight: Translated: 28772; Mature: 28772
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: ACT_SITE 53-53
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG CCCEEEEEEECCEEECCEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCC QVIHFDTPLSLEEWQWSNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKT EEEEECCCCCHHHHCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCHHHEEEEEEEHHH ADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIEQD HHHHHHCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHEEEEEEEEECCC DELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYL HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCEEEE WQVNYNN EEEECCC >Mature Secondary Structure MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG CCCEEEEEEECCEEECCEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCC QVIHFDTPLSLEEWQWSNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKT EEEEECCCCCHHHHCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCHHHEEEEEEEHHH ADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIEQD HHHHHHCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHEEEEEEEEECCC DELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYL HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCEEEE WQVNYNN EEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12721629