Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
---|---|
Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is dus1 [H]
Identifier: 49183110
GI number: 49183110
Start: 79418
End: 80392
Strand: Direct
Name: dus1 [H]
Synonym: BAS0075
Alternate gene names: 49183110
Gene position: 79418-80392 (Clockwise)
Preceding gene: 49183109
Following gene: 49183111
Centisome position: 1.52
GC content: 39.38
Gene sequence:
>975_bases ATGAAAAATCCGGTTGTATTAGCACCGATGGCGGGAGTGTGTAACTCTGCATTCCGTTTGACAGTAAAAGAATTCGGTGC AGGACTAGTTTGTGCCGAAATGGTAAGTGATAAAGCGATACTATTGAATAATAAAAGAACATTAGATATGTTATATATCG ATGAGAGAGAAAAGCCATTAAGTTTACAAATTTTTGGTGGAGAGAAAGAAACCCTTGTAGATGCTGCGAAATACGTAGAT CAATATACGACAGCAGACATCATTGATATTAATATGGGCTGTCCAGTACCGAAAATCGTTAAGTGTGATGCAGGAGCAAA GTGGCTTTTAGACCCAAATAAAATATATGAAATGGTAGCGGCAGTTGTAGATGCTGTAGAAAAACCAGTTACAGTTAAAA TGCGTATTGGTTGGGATGAGGATCATATTTTCGCAATCGAGAATGCGAAAGCTGTTGAGCGTGCTGGTGGACAAGTGGTA GCAGTTCATGGACGTACAAGAGTACAAATGTATGAAGGAAAAGCGGATTGGGATATTATTAAACAAGTAAAGCAAGCTGT AAATATCCCGGTTATCGGAAATGGTGATGTCGCAACGCCACAAGATGCAAAGCGTATGCTTGATGAAATTGGTGTAGATG GTGTTATGATTGGCCGCGCTGCCCTTGGAGATCCTTGGATGATTTATCGTACGGTAAAGTATTTAGAGACAGGTGAATTA ATGCCGGAACCGACAGTACGTGAGAAAATTGACGTATGTATGTTGCATCTAGATCGTCTAATCGATTTAAAGAACGAAAG TGTCGCTGTAAGAGAGATGAGAAAGCATGCAGCTTGGTATTTAAAAGGTATTCGTGGTAATGCAAATGTACGTAATGGTA TAAATGCTTGTAATACGCGTGAAGACCTTGCAAATGTATTAGGTGTATTTGTAGAAGAAGTGGAAGCGAAACAACAAACA ATTCACGTTGGTTAA
Upstream 100 bases:
>100_bases TGGAAGTTGCTAAAGCATTAAAAGTCTCGATAGATGAGCTAATGCCAAAGTAACTATGAAGGAAGGAGTAAATCGAGTGT TAAAAATCGCAAATATTGAG
Downstream 100 bases:
>100_bases TAATAGGGAGGGAAGATTGACATTCTTCTATACACTTCCTATAATTACGTGAAAGAAAGAAGAACTGCCAGTTAGTTGCT GGCAGTTTTTCTAGTTGAGT
Product: NifR3 family TIM-barrel protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKPLSLQIFGGEKETLVDAAKYVD QYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERAGGQVV AVHGRTRVQMYEGKADWDIIKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGEL MPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYLKGIRGNANVRNGINACNTREDLANVLGVFVEEVEAKQQT IHVG
Sequences:
>Translated_324_residues MKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKPLSLQIFGGEKETLVDAAKYVD QYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERAGGQVV AVHGRTRVQMYEGKADWDIIKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGEL MPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYLKGIRGNANVRNGINACNTREDLANVLGVFVEEVEAKQQT IHVG >Mature_324_residues MKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKPLSLQIFGGEKETLVDAAKYVD QYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERAGGQVV AVHGRTRVQMYEGKADWDIIKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGEL MPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYLKGIRGNANVRNGINACNTREDLANVLGVFVEEVEAKQQT IHVG
Specific function: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs [H]
COG id: COG0042
COG function: function code J; tRNA-dihydrouridine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dus family [H]
Homologues:
Organism=Homo sapiens, GI239788483, Length=229, Percent_Identity=31.0043668122271, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI239788462, Length=229, Percent_Identity=31.0043668122271, Blast_Score=122, Evalue=3e-28, Organism=Homo sapiens, GI40807366, Length=227, Percent_Identity=31.7180616740088, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI31742496, Length=226, Percent_Identity=30.9734513274336, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI8923374, Length=249, Percent_Identity=28.5140562248996, Blast_Score=95, Evalue=9e-20, Organism=Escherichia coli, GI1789660, Length=313, Percent_Identity=38.0191693290735, Blast_Score=215, Evalue=3e-57, Organism=Escherichia coli, GI1788462, Length=253, Percent_Identity=37.1541501976285, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI145693211, Length=227, Percent_Identity=27.7533039647577, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17543114, Length=228, Percent_Identity=31.5789473684211, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17507177, Length=243, Percent_Identity=29.6296296296296, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17510279, Length=245, Percent_Identity=28.9795918367347, Blast_Score=85, Evalue=6e-17, Organism=Caenorhabditis elegans, GI25144369, Length=215, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323560, Length=232, Percent_Identity=30.1724137931034, Blast_Score=96, Evalue=7e-21, Organism=Saccharomyces cerevisiae, GI6323437, Length=229, Percent_Identity=26.6375545851528, Blast_Score=83, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6323433, Length=275, Percent_Identity=25.0909090909091, Blast_Score=77, Evalue=4e-15, Organism=Drosophila melanogaster, GI24580595, Length=252, Percent_Identity=34.1269841269841, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI19920448, Length=252, Percent_Identity=34.1269841269841, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI24585320, Length=239, Percent_Identity=33.8912133891213, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI45549423, Length=237, Percent_Identity=29.957805907173, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI19921524, Length=306, Percent_Identity=25.4901960784314, Blast_Score=92, Evalue=5e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR004652 - InterPro: IPR001269 - InterPro: IPR018517 [H]
Pfam domain/function: PF01207 Dus [H]
EC number: NA
Molecular weight: Translated: 35903; Mature: 35903
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS01136 UPF0034
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKPL CCCCEEECCHHHHCCHHHEEEHHHHCCCCEEHHHHCCCEEEEECCCEEEEEEECCCCCCE SLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEMVA EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEECHHHHHHHHH AVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERAGGQVVAVHGRTRVQMYEGKADWDII HHHHHHCCCEEEEEEECCCCCCEEEECCCHHHHHCCCCEEEEECCEEEEEECCCCCHHHH KQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGEL HHHHHHHCCCEECCCCCCCCHHHHHHHHHHCCCEEEECCHHCCCCHHHHHHHHHHHCCCC MPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYLKGIRGNANVRNGINACNTR CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH EDLANVLGVFVEEVEAKQQTIHVG HHHHHHHHHHHHHHHHHHHEEECC >Mature Secondary Structure MKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKPL CCCCEEECCHHHHCCHHHEEEHHHHCCCCEEHHHHCCCEEEEECCCEEEEEEECCCCCCE SLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYEMVA EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEECHHHHHHHHH AVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERAGGQVVAVHGRTRVQMYEGKADWDII HHHHHHCCCEEEEEEECCCCCCEEEECCCHHHHHCCCCEEEEECCEEEEEECCCCCHHHH KQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMIYRTVKYLETGEL HHHHHHHCCCEECCCCCCCCHHHHHHHHHHCCCEEEECCHHCCCCHHHHHHHHHHHCCCC MPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYLKGIRGNANVRNGINACNTR CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH EDLANVLGVFVEEVEAKQQTIHVG HHHHHHHHHHHHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]