Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is lysS
Identifier: 49183111
GI number: 49183111
Start: 80552
End: 82051
Strand: Direct
Name: lysS
Synonym: BAS0076
Alternate gene names: 49183111
Gene position: 80552-82051 (Clockwise)
Preceding gene: 49183110
Following gene: 49183112
Centisome position: 1.54
GC content: 36.73
Gene sequence:
>1500_bases ATGGATAACATGAACCACGAAGAATTAAACGACCAATTGCTTGTTCGTCGTGAAAAGCTACATAACTTACGTGAGCAAGG AATCGATCCTTTCGGTAAACGATTTGAACGTACAAATGCAACAAATGACTTATTAAGCCTATATGGAGAGTTCTCTAAAG AAGAATTAGAAGAGAAAGAAATCTCTGTTTCTATCGCTGGTCGTATTATGACAAAGCGTGGTAAAGGAAAAGCTGGATTT GCACATATTCAAGATTTACATGGACAAGTTCAAATTTATGTTCGTAAAGATGCTGTTGGAGATGAAGAATACGAATTATT TAAAACAGCAGATTTAGGTGACTTAGTAGGTATTGAAGGTAAAGTTTTTAAAACGAACGTTGGAGAACTTTCAGTGAAAG CAACAGGCTTTACACTATTAACGAAATCTCTTCGTCCATTACCGGATAAATATCATGGGTTAAAAGATGTTGAACAACGC TACCGTCAACGTTACTTAGACTTAATTACAAGTATGGAAAGTCGTGAAACATTCGTCACTCGCAGTAAGATCATTCGCGA AATGAGAAGATACTTAGATGACAACGGTTATCTTGAAGTGGAAACACCTATGATGCATGCAATTGCAGGTGGAGCTTCTG CTCGTCCTTTCATCACGCATCATAATGCGTTAGATATGGAATTATATATGCGTATCGCAATTGAACTTCATTTAAAACGC CTTATTGTGGGTGGATTAGAAAAAGTTTATGAAATCGGCCGTGTATTCCGTAATGAGGGTGTATCAACTCGTCATAATCC TGAATTTACGATGATTGAATTATATGAAGCGTATGCTGATTATAAAGATATTATGAAACTAACAGAAAATATGGTTGCTC ATATCGCGAAGCAAGTACTAGGTACAACAACAATCCAATATGGTGATTATGAAATTAATCTAGAACCAGAATGGACACGC CTTCATATGGTAGATGCAATTAAAGAACATTCTGGAGCAGATTTCTGGAATCCGATGAGTGTAGAAGAAGCGCGTGAACT TGCAAAAGAACATAATGTAGAAATTAAGGATACAATGGAAGTTGGTCATATTATTAATGAATTCTTCGAGCAAAAAGTAG AAGATAAATTAATCCAACCAACATTTATTTACGGTCATCCGGTAGAAATTTCGCCACTTGCGAAAAAGAATGATGAAGAT CCACGATTCACAGATCGTTTCGAATTGTTTATCGTTGCACGTGAACATGCAAATGCGTTCACTGAGCTAAATGATCCAAT CGATCAGAAAGAACGTTTTGAAGCGCAATTAAAAGAACGCGAACAAGGTAATGACGAAGCTCACATGATGGATGATGATT ATATCGAAGCTCTTGAGTATGGTATGCCTCCTACAGGTGGACTAGGAATTGGTATTGATCGCCTTGTTATGTTATTAACG AATGCACCATCTATTCGTGATGTATTATTATTCCCTGCTATGCGTCATAAACAAGACTAA
Upstream 100 bases:
>100_bases AAGAACTGCCAGTTAGTTGCTGGCAGTTTTTCTAGTTGAGTAGAAAATGCTATACTGTATATATTGTAAAAATTAATAGA GCTGGAGTGATATCAATACC
Downstream 100 bases:
>100_bases GCTTTGGAGATTTCTCCAAAGCTTTTTTTATTTGGGTGTGAACAGCTTGGAGATAGTAAATCTTGATAGTGCGAAAAATT ATATTTATATAGAAGAAAAG
Product: lysyl-tRNA synthetase
Products: NA
Alternate protein names: Lysine--tRNA ligase; LysRS
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MDNMNHEELNDQLLVRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKEISVSIAGRIMTKRGKGKAGF AHIQDLHGQVQIYVRKDAVGDEEYELFKTADLGDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQR YRQRYLDLITSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKR LIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVAHIAKQVLGTTTIQYGDYEINLEPEWTR LHMVDAIKEHSGADFWNPMSVEEARELAKEHNVEIKDTMEVGHIINEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNDED PRFTDRFELFIVAREHANAFTELNDPIDQKERFEAQLKEREQGNDEAHMMDDDYIEALEYGMPPTGGLGIGIDRLVMLLT NAPSIRDVLLFPAMRHKQD
Sequences:
>Translated_499_residues MDNMNHEELNDQLLVRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKEISVSIAGRIMTKRGKGKAGF AHIQDLHGQVQIYVRKDAVGDEEYELFKTADLGDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQR YRQRYLDLITSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKR LIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVAHIAKQVLGTTTIQYGDYEINLEPEWTR LHMVDAIKEHSGADFWNPMSVEEARELAKEHNVEIKDTMEVGHIINEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNDED PRFTDRFELFIVAREHANAFTELNDPIDQKERFEAQLKEREQGNDEAHMMDDDYIEALEYGMPPTGGLGIGIDRLVMLLT NAPSIRDVLLFPAMRHKQD >Mature_499_residues MDNMNHEELNDQLLVRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKEISVSIAGRIMTKRGKGKAGF AHIQDLHGQVQIYVRKDAVGDEEYELFKTADLGDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQR YRQRYLDLITSMESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKR LIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVAHIAKQVLGTTTIQYGDYEINLEPEWTR LHMVDAIKEHSGADFWNPMSVEEARELAKEHNVEIKDTMEVGHIINEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNDED PRFTDRFELFIVAREHANAFTELNDPIDQKERFEAQLKEREQGNDEAHMMDDDYIEALEYGMPPTGGLGIGIDRLVMLLT NAPSIRDVLLFPAMRHKQD
Specific function: Unknown
COG id: COG1190
COG function: function code J; Lysyl-tRNA synthetase (class II)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI194272210, Length=504, Percent_Identity=41.6666666666667, Blast_Score=385, Evalue=1e-107, Organism=Homo sapiens, GI5031815, Length=504, Percent_Identity=41.6666666666667, Blast_Score=385, Evalue=1e-107, Organism=Homo sapiens, GI40789249, Length=281, Percent_Identity=24.5551601423488, Blast_Score=79, Evalue=1e-14, Organism=Escherichia coli, GI1789256, Length=490, Percent_Identity=52.8571428571429, Blast_Score=526, Evalue=1e-151, Organism=Escherichia coli, GI1790571, Length=493, Percent_Identity=52.1298174442191, Blast_Score=526, Evalue=1e-150, Organism=Escherichia coli, GI87082379, Length=325, Percent_Identity=33.2307692307692, Blast_Score=155, Evalue=6e-39, Organism=Escherichia coli, GI1788173, Length=296, Percent_Identity=26.3513513513513, Blast_Score=91, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17535925, Length=491, Percent_Identity=46.4358452138493, Blast_Score=429, Evalue=1e-120, Organism=Caenorhabditis elegans, GI17535927, Length=491, Percent_Identity=46.4358452138493, Blast_Score=429, Evalue=1e-120, Organism=Caenorhabditis elegans, GI71994340, Length=491, Percent_Identity=46.0285132382892, Blast_Score=428, Evalue=1e-120, Organism=Caenorhabditis elegans, GI17551876, Length=508, Percent_Identity=22.244094488189, Blast_Score=89, Evalue=5e-18, Organism=Caenorhabditis elegans, GI32566633, Length=271, Percent_Identity=23.6162361623616, Blast_Score=72, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6320242, Length=510, Percent_Identity=42.7450980392157, Blast_Score=405, Evalue=1e-114, Organism=Saccharomyces cerevisiae, GI6324256, Length=483, Percent_Identity=32.2981366459627, Blast_Score=209, Evalue=7e-55, Organism=Saccharomyces cerevisiae, GI6323011, Length=350, Percent_Identity=25.1428571428571, Blast_Score=87, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6321807, Length=323, Percent_Identity=26.3157894736842, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24640849, Length=505, Percent_Identity=41.980198019802, Blast_Score=397, Evalue=1e-111, Organism=Drosophila melanogaster, GI24640851, Length=505, Percent_Identity=41.980198019802, Blast_Score=397, Evalue=1e-111, Organism=Drosophila melanogaster, GI24584738, Length=269, Percent_Identity=26.3940520446097, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI19922416, Length=376, Percent_Identity=23.6702127659574, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: 1200 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYK_BACAH (A0R8E9)
Other databases:
- EMBL: CP000485 - RefSeq: YP_892999.1 - ProteinModelPortal: A0R8E9 - SMR: A0R8E9 - STRING: A0R8E9 - EnsemblBacteria: EBBACT00000067602 - GeneID: 4546945 - GenomeReviews: CP000485_GR - KEGG: btl:BALH_0075 - eggNOG: COG1190 - GeneTree: EBGT00070000032139 - HOGENOM: HBG631383 - OMA: RNEGMDH - ProtClustDB: PRK00484 - BioCyc: BTHU412694:BALH_0075-MONOMER - GO: GO:0005737 - HAMAP: MF_00252 - InterPro: IPR004364 - InterPro: IPR018150 - InterPro: IPR006195 - InterPro: IPR002313 - InterPro: IPR018149 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004365 - Gene3D: G3DSA:2.40.50.140 - PANTHER: PTHR22594 - PANTHER: PTHR22594:SF4 - PRINTS: PR00982 - TIGRFAMs: TIGR00499
Pfam domain/function: PF00152 tRNA-synt_2; PF01336 tRNA_anti; SSF50249 Nucleic_acid_OB
EC number: =6.1.1.6
Molecular weight: Translated: 57681; Mature: 57681
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNMNHEELNDQLLVRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKE CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ISVSIAGRIMTKRGKGKAGFAHIQDLHGQVQIYVRKDAVGDEEYELFKTADLGDLVGIEG HHHEEHHHHHCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCHHHHHHCCCCCHHCCCCC KVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVT EEEEECCCCEEEEECCHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKR HHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH LIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVAHIAKQVL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTTTIQYGDYEINLEPEWTRLHMVDAIKEHSGADFWNPMSVEEARELAKEHNVEIKDTME CCCEEEECCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH VGHIINEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNDEDPRFTDRFELFIVAREHANAF HHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCCCCCCCCEEEEEEEEEHHCCHH TELNDPIDQKERFEAQLKEREQGNDEAHMMDDDYIEALEYGMPPTGGLGIGIDRLVMLLT HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH NAPSIRDVLLFPAMRHKQD CCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MDNMNHEELNDQLLVRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKE CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ISVSIAGRIMTKRGKGKAGFAHIQDLHGQVQIYVRKDAVGDEEYELFKTADLGDLVGIEG HHHEEHHHHHCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCHHHHHHCCCCCHHCCCCC KVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVT EEEEECCCCEEEEECCHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKR HHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH LIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVAHIAKQVL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTTTIQYGDYEINLEPEWTRLHMVDAIKEHSGADFWNPMSVEEARELAKEHNVEIKDTME CCCEEEECCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH VGHIINEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNDEDPRFTDRFELFIVAREHANAF HHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCCCCCCCCEEEEEEEEEHHCCHH TELNDPIDQKERFEAQLKEREQGNDEAHMMDDDYIEALEYGMPPTGGLGIGIDRLVMLLT HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH NAPSIRDVLLFPAMRHKQD CCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA