Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is gyrB
Identifier: 49183044
GI number: 49183044
Start: 4585
End: 6507
Strand: Direct
Name: gyrB
Synonym: BAS0005
Alternate gene names: 49183044
Gene position: 4585-6507 (Clockwise)
Preceding gene: 49183043
Following gene: 49183045
Centisome position: 0.09
GC content: 36.92
Gene sequence:
>1923_bases ATGGAACAAAAGCAAATGCAAGAAAATTCATATGATGAAAGTCAAATACAGGTACTTGAAGGACTAGAAGCAGTTCGAAA ACGCCCTGGTATGTATATTGGATCTACAAGTGGAAAAGGACTTCACCATCTTGTATGGGAAATCGTTGATAATAGTATCG ATGAAGCACTTGCAGGGTACTGTGACGAAATTAACGTTAGTATCGAAGAAGATAATAGTATTCGTGTAACAGATAATGGA CGTGGTATTCCAGTTGGTATACAAGAAAAAATGGGACGTCCTGCTGTAGAAGTTATTATGACCGTTCTTCATGCTGGTGG TAAGTTTGGCGGCGGCGGTTATAAAGTTTCTGGTGGTTTGCATGGTGTTGGGGCATCTGTAGTAAATGCTCTATCAACAG AACTAGAGGTATTTGTACATCGTGAAGGTAAAATCCATTATCAAAAATACGAAAGAGGTATTCCGGTTGCGGATTTAAAA GTCATTGGTGATACAGATCAAACGGGAACGATAACTCGATTTAAACCAGATCCAGAAATTTTTCAGGAAACAACAGTATA CGAATTTGATACACTAGCAACTCGTATGCGTGAATTAGCATTTTTAAATCGTAATATTAAACTGACGATTGAAGATAAAC GTGAACATAAGCAAAAAAAAGAATTCCATTATGAAGGTGGAATTAAATCATATGTTGAGCATTTAAACCGCTCAAAACAA CCAATCCATGAAGAGCCTGTATATGTAGAAGGATCAAAAGATGGTATTCAAGTTGAAGTTTCCTTACAGTATAACGAAGG ATATACAAATAATATTTACTCATTTACGAACAACATTCACACGTATGAAGGTGGAACACATGAAGTAGGGTTTAAAACAG CTTTAACTCGTGTGATTAACGATTATGGGCGTAAAAATAGTATTCTAAAAGATGCAGACAGTAATTTAACTGGTGAGGAC GTTCGTGAAGGTTTAACTGCAATTGTATCAATTAAACATCCAAATCCACAATTTGAAGGACAAACGAAGACGAAACTTGG GAATAGTGAAGCGAGAACGATTACAGAGTCTGTGTTTTCAGAGGCATTTGAAAAGTTCTTACTAGAAAACCCGAACGTTG CACGAAAAATCGTAGAAAAAGGTACGATGGCAGCGCGTGCACGTGTTGCAGCGAAAAAAGCACGTGAATTGACACGTCGT AAGAGCGCGTTAGAAGTTTCAAGTTTACCTGGTAAATTAGCAGATTGCTCTTCAAAAGATCCAGCAATTAGTGAAATTTA CATTGTAGAGGGTGACTCTGCCGGTGGATCAGCAAAGCAAGGGCGTGATCGTCACTTCCAAGCGATTTTACCACTGAAAG GTAAAATTATTAACGTTGAAAAGGCAAGATTAGATAAAATCTTATCTAACGATGAAGTGCGTACAATTATTACTGCAATT GGTACGAACATTGGCGGAGATTTTGATATTGAGAAAGCTCGTTATCATAAAGTTATTATTATGACGGATGCCGACGTAGA TGGTGCGCATATTCGTACCCTATTATTAACGTTCTTCTATCGTTATATGCGTCAAATTATTGAACATGGTTATATCTATA TTGCACAGCCACCGTTGTTTAAAGTACAACAAGGTAAAAAAATTCAATATGCTTATAATGAGAAAGAGCTTGAAAAGATT TTAGCTGAATTACCAGCTCAACCTAAACCTGGAATCCAACGTTACAAAGGTTTAGGAGAAATGAATCCAACTCAGCTTTG GGAAACAACAATGGACCCAGAAGTACGTTCATTACTTCAAGTTTCCCTTCAAGATGCAATTGAAGCAGATGAAACATTTG AAATTTTAATGGGGGATAAAGTAGAGCCACGTCGTAACTTTATCCAAGAAAATGCAAAATACGTGAAAAACCTTGATATT TAA
Upstream 100 bases:
>100_bases AAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATAGGGCGTAATCCCTGTTTAAATGGAAA AGTAGGTGATCTTTGTGTCA
Downstream 100 bases:
>100_bases ATGAGTAATGACAGGAATCTGAGTATTCCTGTCTTCTACATATAAATCAATGTATGTGTAACGGAAATGTAAGAGGAGGT GCTCGTTGATGTCAGACAAT
Product: DNA gyrase subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 640; Mature: 640
Protein sequence:
>640_residues MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIEEDNSIRVTDNG RGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLK VIGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGED VREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI GTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKI LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI
Sequences:
>Translated_640_residues MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIEEDNSIRVTDNG RGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLK VIGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGED VREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI GTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKI LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI >Mature_640_residues MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIEEDNSIRVTDNG RGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLK VIGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGED VREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI GTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKI LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain
Homologues:
Organism=Homo sapiens, GI19913406, Length=609, Percent_Identity=27.0935960591133, Blast_Score=137, Evalue=4e-32, Organism=Homo sapiens, GI19913408, Length=627, Percent_Identity=26.3157894736842, Blast_Score=132, Evalue=1e-30, Organism=Escherichia coli, GI48994957, Length=553, Percent_Identity=59.4936708860759, Blast_Score=652, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=628, Percent_Identity=39.6496815286624, Blast_Score=447, Evalue=1e-127, Organism=Caenorhabditis elegans, GI17535065, Length=618, Percent_Identity=25.0809061488673, Blast_Score=135, Evalue=9e-32, Organism=Caenorhabditis elegans, GI212645845, Length=541, Percent_Identity=25.3234750462107, Blast_Score=123, Evalue=4e-28, Organism=Caenorhabditis elegans, GI212645657, Length=227, Percent_Identity=26.431718061674, Blast_Score=72, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6324241, Length=616, Percent_Identity=26.2987012987013, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI17136538, Length=620, Percent_Identity=25.1612903225806, Blast_Score=119, Evalue=9e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GYRB_BACAN (Q9X3Y6)
Other databases:
- EMBL: AE016879 - EMBL: AE017334 - EMBL: AE017225 - EMBL: AF090333 - RefSeq: NP_842577.1 - RefSeq: YP_016608.1 - RefSeq: YP_026296.1 - ProteinModelPortal: Q9X3Y6 - EnsemblBacteria: EBBACT00000010328 - EnsemblBacteria: EBBACT00000015641 - EnsemblBacteria: EBBACT00000021045 - GeneID: 1083919 - GeneID: 2816408 - GeneID: 2848886 - GenomeReviews: AE016879_GR - GenomeReviews: AE017225_GR - GenomeReviews: AE017334_GR - KEGG: ban:BA_0005 - KEGG: bar:GBAA_0005 - KEGG: bat:BAS0005 - TIGR: BA_0005 - TIGR: GBAA_0005 - GeneTree: EBGT00050000002750 - HOGENOM: HBG304889 - OMA: DCSSRDP - ProtClustDB: PRK05644 - BioCyc: BANT260799:BAS0005-MONOMER - BioCyc: BANT261594:GBAA0005-MONOMER - BRENDA: 5.99.1.3 - GO: GO:0005694 - InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR006171 - Gene3D: G3DSA:3.30.565.10 - Gene3D: G3DSA:3.30.230.10 - Gene3D: G3DSA:3.40.50.670 - PRINTS: PR00418 - SMART: SM00387 - SMART: SM00433 - TIGRFAMs: TIGR01059
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim; SSF55874 ATP_bd_ATPase; SSF54211 Ribosomal_S5_D2-typ_fold; SSF56719 Topo_IIA_cen
EC number: =5.99.1.3
Molecular weight: Translated: 71897; Mature: 71897
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY CCHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC CDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL CCCCEEEEECCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCC HGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFKPDPEI CHHHHHHHHHHHHHEEEEEECCCCEEHHHHHCCCCEEEEEEECCCCCCCCEEEECCCHHH FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ HHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCC PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN CCCCCCEEEECCCCCEEEEEEEEECCCCCCCHHHHCCCEEECCCCCCCCHHHHHHHHHHH DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS HHCCCCCCHHCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHH EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI CCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHCCCHHHHHHHHH GTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLF CCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCE KVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQ ECCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHCCCCHHHHHHHH VSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY CCHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC CDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL CCCCEEEEECCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCC HGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFKPDPEI CHHHHHHHHHHHHHEEEEEECCCCEEHHHHHCCCCEEEEEEECCCCCCCCEEEECCCHHH FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ HHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCC PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN CCCCCCEEEECCCCCEEEEEEEEECCCCCCCHHHHCCCEEECCCCCCCCHHHHHHHHHHH DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS HHCCCCCCHHCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHH EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI CCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHCCCHHHHHHHHH GTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLF CCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCE KVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQ ECCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHCCCCHHHHHHHH VSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12721629; 10103241