Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is dnaN [H]
Identifier: 49183041
GI number: 49183041
Start: 1927
End: 3066
Strand: Direct
Name: dnaN [H]
Synonym: BAS0002
Alternate gene names: 49183041
Gene position: 1927-3066 (Clockwise)
Preceding gene: 49183040
Following gene: 49183042
Centisome position: 0.04
GC content: 32.11
Gene sequence:
>1140_bases ATGCGTTTTTCAATTCAAAAAGACTATCTTGTAAGAAGTGTACAAGATGTAATGAAGGCTGTTTCTTTTCGTACAACAAT TCCGATCCTTACAGGAATTAAAGTTGTCGCTACGGAAGAAGGAGTTACATTAACAGGAAGCGATGCTGATATTTCGATTG AATCTTTTATCCCAGTTGAAGAGGATGGAAAAGAAATTGTAGAAGTAAAACAATCAGGAAGTATTGTTTTACAGGCTAAA TATTTTAGTGAAATTGTAAAAAAATTGCCGAAAGAAACTGTAGAAATTTCTGTCGAAAATCATTTAATGACAAAAATAAC TTCTGGGAAATCAGAATTTAATTTAAATGGTTTAGATTCTGCAGAATATCCATTGTTACCACAAATTGAAGAACATCATG TTTTTAAGATTCCAACAGATTTACTTAAACATATGATCAGACAAACTGTATTTGCAGTCTCCACTTCTGAAACAAGACCA ATCTTGACAGGTGTAAACTGGAAGGTATATAACAGCGAACTAACTTGTATTGCTACAGATAGTCACAGGTTAGCTCTTCG AAAAGCAAAAATTGAAGGTATTGTAGATGAATTCCAGGCAAATGTTGTTATTCCGGGAAAAAGCTTAAATGAATTAAGCA AAATTCTAGATGAGTCTGAAGAAATGGTAGATATCGTTATTACGGAGTATCAAGTATTATTCCGTACAAAACATTTATTA TTCTTCTCAAGATTGTTAGAAGGAAATTATCCTGATACAACTCGATTAATTCCTGCAGAGAGTAAAACAGATATTTTTGT AAATACAAAAGAATTTTTACAAGCAATTGATCGTGCATCTCTGTTAGCTAGAGATGGTCGTAATAATGTTGTGAAATTAT CAACTTTAGAGCAGGCAATGCTAGAAATTTCTTCGAATTCACCAGAAATCGGGAAAGTAGTAGAAGAAGTTCAATGTGAA AAAGTAGATGGAGAAGAGTTAAAAATATCTTTTAGTGCAAAATATATGATGGATGCACTAAAGGCATTAGATAGTACTGA AATTAAGATTAGCTTTACTGGAGCAATGAGACCATTCTTAATTCGTACGGTAAATGATGAATCCATTATTCAATTAATTT TACCGGTTCGTACTTACTAA
Upstream 100 bases:
>100_bases AACGGGGTTATCCACATATCCACAAGCCCTATTACTATTACTACTATTTTTTATCTTTATTAATTAAATAAAATCTTATA CTTACCGGAGGTTCTTCTTT
Downstream 100 bases:
>100_bases GTAAGAAATAAGGGTTGCTAGTTTTCAGATGCTAGTAGCCCTTATTTGATTTTTGGGTATTACTTTCCTAATGCTAGTTT ATTTAGTACAATGAAAGAAT
Product: DNA polymerase III subunit beta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEVKQSGSIVLQAK YFSEIVKKLPKETVEISVENHLMTKITSGKSEFNLNGLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP ILTGVNWKVYNSELTCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLL FFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAMLEISSNSPEIGKVVEEVQCE KVDGEELKISFSAKYMMDALKALDSTEIKISFTGAMRPFLIRTVNDESIIQLILPVRTY
Sequences:
>Translated_379_residues MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEVKQSGSIVLQAK YFSEIVKKLPKETVEISVENHLMTKITSGKSEFNLNGLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP ILTGVNWKVYNSELTCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLL FFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAMLEISSNSPEIGKVVEEVQCE KVDGEELKISFSAKYMMDALKALDSTEIKISFTGAMRPFLIRTVNDESIIQLILPVRTY >Mature_379_residues MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEVKQSGSIVLQAK YFSEIVKKLPKETVEISVENHLMTKITSGKSEFNLNGLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP ILTGVNWKVYNSELTCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLL FFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAMLEISSNSPEIGKVVEEVQCE KVDGEELKISFSAKYMMDALKALDSTEIKISFTGAMRPFLIRTVNDESIIQLILPVRTY
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped
COG id: COG0592
COG function: function code L; DNA polymerase sliding clamp subunit (PCNA homolog)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790136, Length=379, Percent_Identity=26.3852242744063, Blast_Score=149, Evalue=4e-37,
Paralogues:
None
Copy number: 5954 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001001 - InterPro: IPR022635 - InterPro: IPR022637 - InterPro: IPR022634 [H]
Pfam domain/function: PF00712 DNA_pol3_beta; PF02767 DNA_pol3_beta_2; PF02768 DNA_pol3_beta_3 [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 42651; Mature: 42651
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECCCCCEEHHHCCCCC EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISVENHLMTKITSGKSEFNLNGLDS CCCHHHHHHHCCCCEEEEEHHHHHHHHHCCCHHEEEEECCCEEEEEECCCCCCCCCCCCC AEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELTCIATD CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHEEECCCCCCEEECCEEEEECCEEEEEEEC SHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLL CCHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH FFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAM HHHHHHCCCCCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHH LEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEIKISFTGAMRPFL HHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCEE IRTVNDESIIQLILPVRTY EEECCCHHHEEEEECCCCC >Mature Secondary Structure MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECCCCCEEHHHCCCCC EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISVENHLMTKITSGKSEFNLNGLDS CCCHHHHHHHCCCCEEEEEHHHHHHHHHCCCHHEEEEECCCEEEEEECCCCCCCCCCCCC AEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELTCIATD CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHEEECCCCCCEEECCEEEEECCEEEEEEEC SHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLL CCHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH FFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAM HHHHHHCCCCCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHH LEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEIKISFTGAMRPFL HHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCEE IRTVNDESIIQLILPVRTY EEECCCHHHEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2987847; 7584024; 9384377; 2846289 [H]