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The map label for this gene is yggS [C]

Identifier: 46447369

GI number: 46447369

Start: 2075684

End: 2076316

Strand: Reverse

Name: yggS [C]

Synonym: pc1735

Alternate gene names: 46447369

Gene position: 2076316-2075684 (Counterclockwise)

Preceding gene: 46447370

Following gene: 46447368

Centisome position: 85.99

GC content: 34.76

Gene sequence:

>633_bases
ATGGTATCTTCTGGAAGAGATCCACAAGATGTTAATTTGATTGTTGTTTCAAAAAACCAACCGATTACTGTTATGCAAGA
TGTTTATCAATCTGGTTGCAGACAGTTTGGCGAAAATCGAGTGATGGAGGCATTAGCGAAAATTCCCGAAATGCCTAGGG
ACATACAGTGGCATTTAATCGGAACGTTGCAGAGTAATAAGGTTGCAAAAATTTTAAATTCCTCAATTTCTCTCATTCAT
TCTGTTCATTCATTTTCTTTAGCTAAAAAGATTTCAGAAGGAAGCCTTCAAAAGCAAAAAATCACTTCTATTTTGCTTCA
AGTGAATGTTTCCAAAGAAGAATCTAAACAAGGTTTAACGCATGATGAATGGGAAAAATTATTAGCACCTTTACAAGAGC
TTTCTAATCTGCGCATTGAAGGATTGATGACAATAGCTCCTCATACAGCAGATTTGGGATATGTGCGTTTCTGTTTTAGA
CAATTGTTTGAGTTAAGAGAAAAATGGAAAAAACAAATGAATAATCCCACTTATTTTAAACACCTTTCTATGGGAATGAC
AAACGATTATTTAATTGCCATTGAAGAAGGAGCAACGCTTCTTAGAATAGGATCAGGTATTTTTGGGCACTAA

Upstream 100 bases:

>100_bases
ATTTTAGATAAACCAAAAAGCCTACGTTCTTGGGATTAAATTTATGCAAAATACTATTGTAGAGAGATACCAAAAAATTC
AAGAAGAGGTAATTTCTAAA

Downstream 100 bases:

>100_bases
AAGATTGCCTATCTGGAATCAAAAGTAGGTAAATTAAGTTTTTGTTGAACTTAATAAATTGGTACTTATAAGCTACTCCG
TTGAATACTTCTCTTGAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MVSSGRDPQDVNLIVVSKNQPITVMQDVYQSGCRQFGENRVMEALAKIPEMPRDIQWHLIGTLQSNKVAKILNSSISLIH
SVHSFSLAKKISEGSLQKQKITSILLQVNVSKEESKQGLTHDEWEKLLAPLQELSNLRIEGLMTIAPHTADLGYVRFCFR
QLFELREKWKKQMNNPTYFKHLSMGMTNDYLIAIEEGATLLRIGSGIFGH

Sequences:

>Translated_210_residues
MVSSGRDPQDVNLIVVSKNQPITVMQDVYQSGCRQFGENRVMEALAKIPEMPRDIQWHLIGTLQSNKVAKILNSSISLIH
SVHSFSLAKKISEGSLQKQKITSILLQVNVSKEESKQGLTHDEWEKLLAPLQELSNLRIEGLMTIAPHTADLGYVRFCFR
QLFELREKWKKQMNNPTYFKHLSMGMTNDYLIAIEEGATLLRIGSGIFGH
>Mature_210_residues
MVSSGRDPQDVNLIVVSKNQPITVMQDVYQSGCRQFGENRVMEALAKIPEMPRDIQWHLIGTLQSNKVAKILNSSISLIH
SVHSFSLAKKISEGSLQKQKITSILLQVNVSKEESKQGLTHDEWEKLLAPLQELSNLRIEGLMTIAPHTADLGYVRFCFR
QLFELREKWKKQMNNPTYFKHLSMGMTNDYLIAIEEGATLLRIGSGIFGH

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=223, Percent_Identity=36.322869955157, Blast_Score=110, Evalue=9e-25,
Organism=Escherichia coli, GI1789321, Length=213, Percent_Identity=34.2723004694836, Blast_Score=120, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17533025, Length=217, Percent_Identity=33.6405529953917, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=208, Percent_Identity=35.5769230769231, Blast_Score=102, Evalue=6e-23,
Organism=Drosophila melanogaster, GI45550861, Length=214, Percent_Identity=34.1121495327103, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23807; Mature: 23807

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSSGRDPQDVNLIVVSKNQPITVMQDVYQSGCRQFGENRVMEALAKIPEMPRDIQWHLI
CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
GTLQSNKVAKILNSSISLIHSVHSFSLAKKISEGSLQKQKITSILLQVNVSKEESKQGLT
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCC
HDEWEKLLAPLQELSNLRIEGLMTIAPHTADLGYVRFCFRQLFELREKWKKQMNNPTYFK
HHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
HLSMGMTNDYLIAIEEGATLLRIGSGIFGH
HHHCCCCCCEEEEECCCCEEEEECCCCCCC
>Mature Secondary Structure
MVSSGRDPQDVNLIVVSKNQPITVMQDVYQSGCRQFGENRVMEALAKIPEMPRDIQWHLI
CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
GTLQSNKVAKILNSSISLIHSVHSFSLAKKISEGSLQKQKITSILLQVNVSKEESKQGLT
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCC
HDEWEKLLAPLQELSNLRIEGLMTIAPHTADLGYVRFCFRQLFELREKWKKQMNNPTYFK
HHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
HLSMGMTNDYLIAIEEGATLLRIGSGIFGH
HHHCCCCCCEEEEECCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]