Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46447286
Identifier: 46447286
GI number: 46447286
Start: 1983718
End: 1984677
Strand: Reverse
Name: 46447286
Synonym: pc1652
Alternate gene names: NA
Gene position: 1984677-1983718 (Counterclockwise)
Preceding gene: 46447289
Following gene: 46447283
Centisome position: 82.2
GC content: 31.15
Gene sequence:
>960_bases GTGACAAAACACGTCTTTTATCTCATTTTAGATAAATGTTTTATTTTAAATTTTATAGGAGTGTTAAATATGTCAATAAA TTTAAATTCTTCAATGTGTAATTCCGTTTATCCCGTATTAGATCAACCGACATTGAATCAAACAACATTGAATCAACCAA AAGAAAAAGTGTGTGAAGAAGTTGTGTTGAAAATAACTAACTGTTCTCATACTCCTGAGAATAAGCCTTGTGTTATAGGC GAGAATAAACTTCCTGTTGAAGATGGGGTGAATTTTAGATCTTTTAATTGTCCTATTACCCTTTACCCATTTACAGATCC TGTTGTAGATGAATGTGGCCATACATTTGAACGAGAAGCAATTATGGAAATTTATAACAGAGCAATTGCAGAAGGAACTT CATTTACGTGTCCTTTGAATCCTAGTAAAATTCTCGACGTTAGCAAACTTATTAAAAATTATAATTTAGCTGGTGCTAAA GAAGAAGTGGACGAATTTACTAAAAAACATACTTCTGAAAAAAAGACCTCCCTTGAGTTAATGAAAGAACTTATGCAAGA GCATACACTAGAAAGGCGAGAGTATAAAACAGAAATGCAAAAATTAATAAGCAGGCATGAACGATTTTTAGAAGATTTTA GGCCCCTTGCACGCGATACAGAAGAATCTTTAAATACAAGTGCTAATATTTTAAACCAATGTTCTATTCTTAAGGATAAA AACGTCATTTTGGAGAAAAAAGTTAAGAATTTTGAGACAATGAGTGTAGCAGATAGACTATTTTCATACCTTTTTCCTCG TTATAACGAAGCTATTTCCACGAGAAATATAACGCTTGAAGAACAAGAGCTTCTTAATAAATCTACGATAACTAATACAG AAATTGAGGCTGAAGGAAGAAAGTTAAAAAACCTAAAAAATAAGATAGAAAAATATTATCCATCAGTAGAGACAAAATAA
Upstream 100 bases:
>100_bases GATATCCTTTGATAACTATGAATAAGCAGATATATAAACAACTAATTTTCTAAATTAAATTTAAATTTTTATTGTTTATC AAGTTTAAGTAATTTAAAGC
Downstream 100 bases:
>100_bases AACTTTTTGTTTTGGTTAATCTAAATTTGAAAATAATTTCTTTCAAATTTAGATTAACTCAATCTTGTCCAAACTTTGCT CAGTTAGCTATAAATCATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MTKHVFYLILDKCFILNFIGVLNMSINLNSSMCNSVYPVLDQPTLNQTTLNQPKEKVCEEVVLKITNCSHTPENKPCVIG ENKLPVEDGVNFRSFNCPITLYPFTDPVVDECGHTFEREAIMEIYNRAIAEGTSFTCPLNPSKILDVSKLIKNYNLAGAK EEVDEFTKKHTSEKKTSLELMKELMQEHTLERREYKTEMQKLISRHERFLEDFRPLARDTEESLNTSANILNQCSILKDK NVILEKKVKNFETMSVADRLFSYLFPRYNEAISTRNITLEEQELLNKSTITNTEIEAEGRKLKNLKNKIEKYYPSVETK
Sequences:
>Translated_319_residues MTKHVFYLILDKCFILNFIGVLNMSINLNSSMCNSVYPVLDQPTLNQTTLNQPKEKVCEEVVLKITNCSHTPENKPCVIG ENKLPVEDGVNFRSFNCPITLYPFTDPVVDECGHTFEREAIMEIYNRAIAEGTSFTCPLNPSKILDVSKLIKNYNLAGAK EEVDEFTKKHTSEKKTSLELMKELMQEHTLERREYKTEMQKLISRHERFLEDFRPLARDTEESLNTSANILNQCSILKDK NVILEKKVKNFETMSVADRLFSYLFPRYNEAISTRNITLEEQELLNKSTITNTEIEAEGRKLKNLKNKIEKYYPSVETK >Mature_318_residues TKHVFYLILDKCFILNFIGVLNMSINLNSSMCNSVYPVLDQPTLNQTTLNQPKEKVCEEVVLKITNCSHTPENKPCVIGE NKLPVEDGVNFRSFNCPITLYPFTDPVVDECGHTFEREAIMEIYNRAIAEGTSFTCPLNPSKILDVSKLIKNYNLAGAKE EVDEFTKKHTSEKKTSLELMKELMQEHTLERREYKTEMQKLISRHERFLEDFRPLARDTEESLNTSANILNQCSILKDKN VILEKKVKNFETMSVADRLFSYLFPRYNEAISTRNITLEEQELLNKSTITNTEIEAEGRKLKNLKNKIEKYYPSVETK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36913; Mature: 36782
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKHVFYLILDKCFILNFIGVLNMSINLNSSMCNSVYPVLDQPTLNQTTLNQPKEKVCEE CCCHHHHHHHHHHHHHHHHHHHHCCEECCHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHH VVLKITNCSHTPENKPCVIGENKLPVEDGVNFRSFNCPITLYPFTDPVVDECGHTFEREA HHHHHHCCCCCCCCCCEEECCCCCCHHCCCCEEEECCCEEEECCCCHHHHHHCCHHHHHH IMEIYNRAIAEGTSFTCPLNPSKILDVSKLIKNYNLAGAKEEVDEFTKKHTSEKKTSLEL HHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH MKELMQEHTLERREYKTEMQKLISRHERFLEDFRPLARDTEESLNTSANILNQCSILKDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NVILEKKVKNFETMSVADRLFSYLFPRYNEAISTRNITLEEQELLNKSTITNTEIEAEGR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHH KLKNLKNKIEKYYPSVETK HHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TKHVFYLILDKCFILNFIGVLNMSINLNSSMCNSVYPVLDQPTLNQTTLNQPKEKVCEE CCHHHHHHHHHHHHHHHHHHHHCCEECCHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHH VVLKITNCSHTPENKPCVIGENKLPVEDGVNFRSFNCPITLYPFTDPVVDECGHTFEREA HHHHHHCCCCCCCCCCEEECCCCCCHHCCCCEEEECCCEEEECCCCHHHHHHCCHHHHHH IMEIYNRAIAEGTSFTCPLNPSKILDVSKLIKNYNLAGAKEEVDEFTKKHTSEKKTSLEL HHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH MKELMQEHTLERREYKTEMQKLISRHERFLEDFRPLARDTEESLNTSANILNQCSILKDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NVILEKKVKNFETMSVADRLFSYLFPRYNEAISTRNITLEEQELLNKSTITNTEIEAEGR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHH KLKNLKNKIEKYYPSVETK HHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA