Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46447283
Identifier: 46447283
GI number: 46447283
Start: 1979980
End: 1981545
Strand: Reverse
Name: 46447283
Synonym: pc1649
Alternate gene names: NA
Gene position: 1981545-1979980 (Counterclockwise)
Preceding gene: 46447286
Following gene: 46447281
Centisome position: 82.07
GC content: 31.93
Gene sequence:
>1566_bases GTGGTAATTTTGATTACTTATTATAATAATCCAATTTCTAAACATAATAGTCTCACTACCAATACAAATACCTGCTCTAG CTATAAATCGAACAACTATTTAAAATTTTCTGAGCGTATTAATTTACTTTGTACAACAATTTTCCAATGTTTCCTCAACT TATTCTTTAATTGTATCCCTAGAGATCAACTTCAATCTCAATGGAAAGAAGTTTTTTGGGGAAGAAAAGTAACTGTTAAT CGCAAATTTATGGAACATCGCCTATCATCCGATCCAACTTCACTAAGTAAGATTGAAAATAAGCTTTTAAGAAATTCTTC AGTTACCCTAGAAGAAATTGATGAATCAACAATCCCATCTTCTAATCTTTTACCTTTATCTCAAGAATTTAAATTGAGCT TTCAAAACAACACTTTTCTAACTATTACAAGTTCCCAAAAGTCTTTATTAATGGAAAAATCGCCCTATTTTCAAGGTCTT TGGTCAGGAAATTTTAAAGAAACTTTTCAACATCCTCTTGCTTTGACACAAAAAGAATTTACTCGTCTAATCAATTGCCT ATTGGATGCTAACTTTAAAGTTCCTGTGGAAGACATTACTTCTTTCATTCAACTAGCTGATTATTATCAACTGACAGATG TTGTAAAAAATTTAGAAAAACAGCTGCTTGATGCATACAAATCAGATAAATTTGAGCTATTTAATTCCAGCGAAGACAGA CTAGTAGAATTAAAAGAATTTTTAGATTTTGCTGAGCGATTTCAATTAAATATTTTAAAAAATTATTTACAGCTTACAGT GGTGAATTTATTGTTAAAGCAAACTCCTCATTTAAAGGAGTTTGAAAAAATTTTAAATTATTTTTCAAATGAGATAGAAG GACTTAATTTTTCAGAAAATGCCTATTTAACTGACGCTCATCTTTTAGCATTAAAAAATTGTAAAAATTTAAAAGTGCTT CAACTTCAGTCATGCCACCATCTCACTGACACAGGTCTAGCATGTTTGCCATCTTTAACAAATTTACAGTATTTAAATTT GAACGGTTGTAAAAAACTTACTGACGCTGGATTAGCGCATTTAACACCCTTAGTGAATTTACAATATTTAGACCTGGGCT TTTGCGATAAGCTCACTAGTAAAGGATTAGGGCATTTTAAATCCTTAATAGCTTTACAACATTTGAACTTGAGTGGGTGT AAATTTATTAGGGACAACGGGTTAGCGCATTTAACACCCTTAGTGGCTTTACAATACTTGAACTTGAGCCAGTGCACTTT TCTTACTGACGCAGGATTAGCACATTTGGTACCACTAGTAGCTTTAAAACATTTAGATCTAAGCTGGTGCAATAGCCTTA CCAATGCTGGATTAGCACATTTAGTACACTTAGTGGCTTTACAATATTTAAATCTGAGCGGATGCATTTATCTTTCTGAA GCTGGGCTAGCACATTTGGCGCCTTTAACTAGTTTACAGCATTTGAATTTGGAAGATTGCGAACATTTTACAAATGCTAG ATTTAGATTAGCGCATTTTAAAGCTTTATTAGCCGCTACAAATTGA
Upstream 100 bases:
>100_bases CCTTCGAATTTAATTTCTATCTTTTATTGCATTAATATTGCACTAATTTTATCTTATATAATATATTTTAAGGTTAAATA CATTTATTTAAACAAGTGGG
Downstream 100 bases:
>100_bases ATCTGAATTGAATCCAACTTACATTAATCTGGATTAGTTATGGCATCCGTAGTGGCTGTTCCACATTATTAAATCTTTTA AAAAATAATTTTTCTTATCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 521; Mature: 521
Protein sequence:
>521_residues MVILITYYNNPISKHNSLTTNTNTCSSYKSNNYLKFSERINLLCTTIFQCFLNLFFNCIPRDQLQSQWKEVFWGRKVTVN RKFMEHRLSSDPTSLSKIENKLLRNSSVTLEEIDESTIPSSNLLPLSQEFKLSFQNNTFLTITSSQKSLLMEKSPYFQGL WSGNFKETFQHPLALTQKEFTRLINCLLDANFKVPVEDITSFIQLADYYQLTDVVKNLEKQLLDAYKSDKFELFNSSEDR LVELKEFLDFAERFQLNILKNYLQLTVVNLLLKQTPHLKEFEKILNYFSNEIEGLNFSENAYLTDAHLLALKNCKNLKVL QLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGC KFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSE AGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKALLAATN
Sequences:
>Translated_521_residues MVILITYYNNPISKHNSLTTNTNTCSSYKSNNYLKFSERINLLCTTIFQCFLNLFFNCIPRDQLQSQWKEVFWGRKVTVN RKFMEHRLSSDPTSLSKIENKLLRNSSVTLEEIDESTIPSSNLLPLSQEFKLSFQNNTFLTITSSQKSLLMEKSPYFQGL WSGNFKETFQHPLALTQKEFTRLINCLLDANFKVPVEDITSFIQLADYYQLTDVVKNLEKQLLDAYKSDKFELFNSSEDR LVELKEFLDFAERFQLNILKNYLQLTVVNLLLKQTPHLKEFEKILNYFSNEIEGLNFSENAYLTDAHLLALKNCKNLKVL QLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGC KFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSE AGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKALLAATN >Mature_521_residues MVILITYYNNPISKHNSLTTNTNTCSSYKSNNYLKFSERINLLCTTIFQCFLNLFFNCIPRDQLQSQWKEVFWGRKVTVN RKFMEHRLSSDPTSLSKIENKLLRNSSVTLEEIDESTIPSSNLLPLSQEFKLSFQNNTFLTITSSQKSLLMEKSPYFQGL WSGNFKETFQHPLALTQKEFTRLINCLLDANFKVPVEDITSFIQLADYYQLTDVVKNLEKQLLDAYKSDKFELFNSSEDR LVELKEFLDFAERFQLNILKNYLQLTVVNLLLKQTPHLKEFEKILNYFSNEIEGLNFSENAYLTDAHLLALKNCKNLKVL QLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGC KFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSE AGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKALLAATN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=191, Percent_Identity=36.1256544502618, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI161333852, Length=210, Percent_Identity=30.952380952381, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI284447308, Length=385, Percent_Identity=26.4935064935065, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI284447314, Length=348, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=9e-15, Organism=Homo sapiens, GI6912466, Length=211, Percent_Identity=31.2796208530806, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI161333854, Length=210, Percent_Identity=30.952380952381, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI289666746, Length=323, Percent_Identity=28.1733746130031, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI27734755, Length=380, Percent_Identity=27.1052631578947, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI296531375, Length=203, Percent_Identity=30.0492610837438, Blast_Score=70, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25151694, Length=194, Percent_Identity=32.9896907216495, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25151696, Length=194, Percent_Identity=32.9896907216495, Blast_Score=77, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322549, Length=152, Percent_Identity=29.6052631578947, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI17647819, Length=225, Percent_Identity=32, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI24662818, Length=217, Percent_Identity=33.6405529953917, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI21357913, Length=234, Percent_Identity=31.1965811965812, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59344; Mature: 59344
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVILITYYNNPISKHNSLTTNTNTCSSYKSNNYLKFSERINLLCTTIFQCFLNLFFNCIP CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCC RDQLQSQWKEVFWGRKVTVNRKFMEHRLSSDPTSLSKIENKLLRNSSVTLEEIDESTIPS HHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCC SNLLPLSQEFKLSFQNNTFLTITSSQKSLLMEKSPYFQGLWSGNFKETFQHPLALTQKEF CCCCCCCHHHEEEECCCEEEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH TRLINCLLDANFKVPVEDITSFIQLADYYQLTDVVKNLEKQLLDAYKSDKFELFNSSEDR HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHH LVELKEFLDFAERFQLNILKNYLQLTVVNLLLKQTPHLKEFEKILNYFSNEIEGLNFSEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC AYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAH CEECHHHHHHHHCCCCCEEEEECCCCCHHHCCHHHHCCCCCEEEECCCCHHHHHHCCHHH LTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYL HHHHCEEEEECCHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHC NLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSE CCCHHHEEHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC AGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKALLAATN CCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCC >Mature Secondary Structure MVILITYYNNPISKHNSLTTNTNTCSSYKSNNYLKFSERINLLCTTIFQCFLNLFFNCIP CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCC RDQLQSQWKEVFWGRKVTVNRKFMEHRLSSDPTSLSKIENKLLRNSSVTLEEIDESTIPS HHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCC SNLLPLSQEFKLSFQNNTFLTITSSQKSLLMEKSPYFQGLWSGNFKETFQHPLALTQKEF CCCCCCCHHHEEEECCCEEEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH TRLINCLLDANFKVPVEDITSFIQLADYYQLTDVVKNLEKQLLDAYKSDKFELFNSSEDR HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHH LVELKEFLDFAERFQLNILKNYLQLTVVNLLLKQTPHLKEFEKILNYFSNEIEGLNFSEN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC AYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAH CEECHHHHHHHHCCCCCEEEEECCCCCHHHCCHHHHCCCCCEEEECCCCHHHHHHCCHHH LTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYL HHHHCEEEEECCHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHC NLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSE CCCHHHEEHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC AGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKALLAATN CCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA