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The map label for this gene is cydB [H]

Identifier: 46447263

GI number: 46447263

Start: 1948144

End: 1949076

Strand: Reverse

Name: cydB [H]

Synonym: pc1629

Alternate gene names: 46447263

Gene position: 1949076-1948144 (Counterclockwise)

Preceding gene: 46447264

Following gene: 46447262

Centisome position: 80.72

GC content: 35.8

Gene sequence:

>933_bases
ATGCTCCATTTGTTTGCAAAAAAAGATATTGAAAGACGGGTCATGTTAAATTCGATTGGGCCAGTTTGGGATGGCAACGA
AGTGTGGTTAGTGACAGCTGGGGGAGCTTTATTTGCTGGATTTCCGGATATTTATGCAACGATGCTTTCAGCTTTTTATG
TTCCTGTCATGGCTTTACTTAGTGCTTTAATTTTTCGCGCTGTGGCTATCGAATTTCGAAGTAAGAAACAGATGGCTTGG
TGGCGCTGGACTTGGGATATTGCCTTTTCCTTGGGAAGTTTGATGATAGCTTTCATTTTGGGGCTTGTGATGGGAAATCT
TATTAGGGGAATGCAGTTAGATGGTTATAAAGAATTCATTGGTCAATTAGAGGATCTTTTACAACCCTATGCCCTTTTAG
TTGGAGGAATGACAGTTTTTCTCTTTCTTATGCACGGTTCAATTTACATTTTGATGAAAACAGAAGGGGAATTTCATGAT
CGGATGAGGATGAAAGCGGTTTCCTGTATTATCTTTTTTATTATTACTTACGCTATTACCACGATGGCAACTTTAATTTA
TATGCCTCATATGATTGAAGCTTTTCGCCATAATCCTTTTTTCTTTATAATTGCTCTTATCAATTTATTAGCCATTGCTA
ATATTCCTCGAGAAATTTACTTTGGAAAAGATTCAAGAGCTTTTATCTGTTCTTGCCTTAATATCATTTGCTTGCTTGCT
CTGTATGCAATAGGAACTTATCCTAATGTCATTCGCTCTATTGATCAGCCAGACGTTCTTAGTTTAACTATTTATAATTC
TGCCTCCTCAGTTAAAACATTGGAAATTTTATTTTTAATTGCTTTAATTGGAGTCCCTCTTGTTATTGCTTATACAACAG
CCATTTATTATATATTTAGAGGGAAAGTTAAAATCGATCCTCACAGCTATTAA

Upstream 100 bases:

>100_bases
CATGATACCCGTCTCTAATTTAGAATTTGGTTGGTTTACAATTTTTGTCATCCTGCTTACAGGCTATGCTATTTTAGATG
GATTTGACTTAGGAGTCGGA

Downstream 100 bases:

>100_bases
GCACACATTTTAAAATATATTTTTGATGTAAAGGCGTTTTTTAAGAAATACAAGTAAATCTTTTGTTACTTTATGGAAAA
AAATAAAATAAGAAAACATT

Product: putative cytochrome bd-I oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALLSALIFRAVAIEFRSKKQMAW
WRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDGYKEFIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHD
RMRMKAVSCIIFFIITYAITTMATLIYMPHMIEAFRHNPFFFIIALINLLAIANIPREIYFGKDSRAFICSCLNIICLLA
LYAIGTYPNVIRSIDQPDVLSLTIYNSASSVKTLEILFLIALIGVPLVIAYTTAIYYIFRGKVKIDPHSY

Sequences:

>Translated_310_residues
MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALLSALIFRAVAIEFRSKKQMAW
WRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDGYKEFIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHD
RMRMKAVSCIIFFIITYAITTMATLIYMPHMIEAFRHNPFFFIIALINLLAIANIPREIYFGKDSRAFICSCLNIICLLA
LYAIGTYPNVIRSIDQPDVLSLTIYNSASSVKTLEILFLIALIGVPLVIAYTTAIYYIFRGKVKIDPHSY
>Mature_310_residues
MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALLSALIFRAVAIEFRSKKQMAW
WRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDGYKEFIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHD
RMRMKAVSCIIFFIITYAITTMATLIYMPHMIEAFRHNPFFFIIALINLLAIANIPREIYFGKDSRAFICSCLNIICLLA
LYAIGTYPNVIRSIDQPDVLSLTIYNSASSVKTLEILFLIALIGVPLVIAYTTAIYYIFRGKVKIDPHSY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=334, Percent_Identity=30.8383233532934, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1787213, Length=335, Percent_Identity=29.5522388059701, Blast_Score=154, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 35171; Mature: 35171

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALL
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHH
SALIFRAVAIEFRSKKQMAWWRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDGYKEFI
HHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHDRMRMKAVSCIIFFIITYAIT
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
TMATLIYMPHMIEAFRHNPFFFIIALINLLAIANIPREIYFGKDSRAFICSCLNIICLLA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHHHHHHH
LYAIGTYPNVIRSIDQPDVLSLTIYNSASSVKTLEILFLIALIGVPLVIAYTTAIYYIFR
HHHHCCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKVKIDPHSY
CEEEECCCCC
>Mature Secondary Structure
MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALL
CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHH
SALIFRAVAIEFRSKKQMAWWRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDGYKEFI
HHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHDRMRMKAVSCIIFFIITYAIT
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
TMATLIYMPHMIEAFRHNPFFFIIALINLLAIANIPREIYFGKDSRAFICSCLNIICLLA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHHHHHHH
LYAIGTYPNVIRSIDQPDVLSLTIYNSASSVKTLEILFLIALIGVPLVIAYTTAIYYIFR
HHHHCCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKVKIDPHSY
CEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]