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The map label for this gene is cydA [H]

Identifier: 46447264

GI number: 46447264

Start: 1949159

End: 1950556

Strand: Reverse

Name: cydA [H]

Synonym: pc1630

Alternate gene names: 46447264

Gene position: 1950556-1949159 (Counterclockwise)

Preceding gene: 46447265

Following gene: 46447263

Centisome position: 80.79

GC content: 37.12

Gene sequence:

>1398_bases
GTGGATGTTTTGATATTAGCTAGAATTCAATTTGCTTTGACAATCATGTTTCATTATATTTATCCCGTTTTGAGCATTGG
CCTTGGATTGATTATGGTCATTGTTGAAGGATTGTATATAAAGACTAAAAATCCTATTTATTTGCGCATGGCACAATTTT
GGACAAAAGTTTTTGCGCTCACCTTTGCGATAGGCGTGGCGACAGGAATTGTCATGGAATTCGAATTTGGGACAAATTGG
GCAACGTATTCTCGTTATGTGGGAGATGTCTTTGGAAGCGCTCTTGCAGCGGAAGGTGTTTTTGCTTTTTTTCTTGAATC
TGGATTTCTAGCGGTTGTCATTTTTGGTTGGAATCGAGTCAGTCCTAAGTTTCATTTTTTTGCAACGACAATGGTTTGTT
TGGGGGCCCATTTTAGTGCTATATGGATTGTAATTGCAAATTCTTGGATGCAGACACCGGCAGGCTTTAAAATTGCCGGA
GAAGGAATGAATGCGCGAGCAGAAATCACTGAATTTTGGGAAATGGTTTTTAATCCCTCTTCAATGATACGACTTGGCCA
CGTCATTTTAGGATGTTGGTTAGCAGGAGCTTTTTTAGTCATTAGTATTTCGGCTTATTATTTGCTTAAAAAGAAGCATC
AAATTTTTGCGCGAAAATCAATCATTATTGGTTTATGGGTTGCTTTCATCACATCTATTCTGCAAGCTTATTCAGGGGAT
AGTAGTGGTAAAGTCGTTGCTAAATATCAACCAACTAAATTAGCAGCGATGGAAGCTCTTTATCAAACGGAATCAGGTGT
CCCTTTAACATTATTTGGTGTTGTAAACACTGAGGAAAAGAAAATTGATTATGCTATTCAAATCCCAAAATTGCTCAGTT
TTTTGTCATTTGGAGATTTTAATGCTGAAATGAAAGGATTAGATCAGGTTAATCCTGAGGACTGGCCCAATGTGCCAGTT
ATATTTAATGTTTATCGATTAATGATTGCTATGTGGGCACTGATGTTCTCACTATCAATAGCTGGATTATACTTATGGTA
TAAAAAAACGTTAGAAAATCATCGCGGTATTTTATGGCTGATGGTTTTTTCAGCTATTTATGCACAAGTGGCTAATCAAG
CAGGTTGGTATAGTGCAGAAACAGGGCGTTATCCTTGGCTTGTCTATGGCTTGTTACGCATTTCTGAAGGGCTTTCTAAG
AGTGTTAAAGCTAATCAAGTTTTGGGCTCAATTATCATGTTTATGTGTGTTTACCTCTTATTGTTTATTCTATTTGTGTA
TATGCTCAACGAAAAAGTTAAACATGGTCCGGAAGAGGAAATAGAAGATGATTCTTCTACTCCTTATCATGGACTTCATC
ATTTGGTAGAGGAAAATCATCATGATACCCGTCTCTAA

Upstream 100 bases:

>100_bases
AGAATATAGACTTTCAAAGAGAAAAATTCAAATTCAGTGACACAAAAATTGAACGTTTATATTTTTAGATTTCTTAAACA
GACACTAATGAGGTTTAAGT

Downstream 100 bases:

>100_bases
TTTAGAATTTGGTTGGTTTACAATTTTTGTCATCCTGCTTACAGGCTATGCTATTTTAGATGGATTTGACTTAGGAGTCG
GAATGCTCCATTTGTTTGCA

Product: putative cytochrome bd-I oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MDVLILARIQFALTIMFHYIYPVLSIGLGLIMVIVEGLYIKTKNPIYLRMAQFWTKVFALTFAIGVATGIVMEFEFGTNW
ATYSRYVGDVFGSALAAEGVFAFFLESGFLAVVIFGWNRVSPKFHFFATTMVCLGAHFSAIWIVIANSWMQTPAGFKIAG
EGMNARAEITEFWEMVFNPSSMIRLGHVILGCWLAGAFLVISISAYYLLKKKHQIFARKSIIIGLWVAFITSILQAYSGD
SSGKVVAKYQPTKLAAMEALYQTESGVPLTLFGVVNTEEKKIDYAIQIPKLLSFLSFGDFNAEMKGLDQVNPEDWPNVPV
IFNVYRLMIAMWALMFSLSIAGLYLWYKKTLENHRGILWLMVFSAIYAQVANQAGWYSAETGRYPWLVYGLLRISEGLSK
SVKANQVLGSIIMFMCVYLLLFILFVYMLNEKVKHGPEEEIEDDSSTPYHGLHHLVEENHHDTRL

Sequences:

>Translated_465_residues
MDVLILARIQFALTIMFHYIYPVLSIGLGLIMVIVEGLYIKTKNPIYLRMAQFWTKVFALTFAIGVATGIVMEFEFGTNW
ATYSRYVGDVFGSALAAEGVFAFFLESGFLAVVIFGWNRVSPKFHFFATTMVCLGAHFSAIWIVIANSWMQTPAGFKIAG
EGMNARAEITEFWEMVFNPSSMIRLGHVILGCWLAGAFLVISISAYYLLKKKHQIFARKSIIIGLWVAFITSILQAYSGD
SSGKVVAKYQPTKLAAMEALYQTESGVPLTLFGVVNTEEKKIDYAIQIPKLLSFLSFGDFNAEMKGLDQVNPEDWPNVPV
IFNVYRLMIAMWALMFSLSIAGLYLWYKKTLENHRGILWLMVFSAIYAQVANQAGWYSAETGRYPWLVYGLLRISEGLSK
SVKANQVLGSIIMFMCVYLLLFILFVYMLNEKVKHGPEEEIEDDSSTPYHGLHHLVEENHHDTRL
>Mature_465_residues
MDVLILARIQFALTIMFHYIYPVLSIGLGLIMVIVEGLYIKTKNPIYLRMAQFWTKVFALTFAIGVATGIVMEFEFGTNW
ATYSRYVGDVFGSALAAEGVFAFFLESGFLAVVIFGWNRVSPKFHFFATTMVCLGAHFSAIWIVIANSWMQTPAGFKIAG
EGMNARAEITEFWEMVFNPSSMIRLGHVILGCWLAGAFLVISISAYYLLKKKHQIFARKSIIIGLWVAFITSILQAYSGD
SSGKVVAKYQPTKLAAMEALYQTESGVPLTLFGVVNTEEKKIDYAIQIPKLLSFLSFGDFNAEMKGLDQVNPEDWPNVPV
IFNVYRLMIAMWALMFSLSIAGLYLWYKKTLENHRGILWLMVFSAIYAQVANQAGWYSAETGRYPWLVYGLLRISEGLSK
SVKANQVLGSIIMFMCVYLLLFILFVYMLNEKVKHGPEEEIEDDSSTPYHGLHHLVEENHHDTRL

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=318, Percent_Identity=40.251572327044, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI87081779, Length=311, Percent_Identity=39.871382636656, Blast_Score=247, Evalue=1e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52569; Mature: 52569

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLILARIQFALTIMFHYIYPVLSIGLGLIMVIVEGLYIKTKNPIYLRMAQFWTKVFAL
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHHH
TFAIGVATGIVMEFEFGTNWATYSRYVGDVFGSALAAEGVFAFFLESGFLAVVIFGWNRV
HHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
SPKFHFFATTMVCLGAHFSAIWIVIANSWMQTPAGFKIAGEGMNARAEITEFWEMVFNPS
CCCHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCH
SMIRLGHVILGCWLAGAFLVISISAYYLLKKKHQIFARKSIIIGLWVAFITSILQAYSGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SSGKVVAKYQPTKLAAMEALYQTESGVPLTLFGVVNTEEKKIDYAIQIPKLLSFLSFGDF
CCCCEEEEECCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHEEEHHHHHHHHHCCCC
NAEMKGLDQVNPEDWPNVPVIFNVYRLMIAMWALMFSLSIAGLYLWYKKTLENHRGILWL
CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
MVFSAIYAQVANQAGWYSAETGRYPWLVYGLLRISEGLSKSVKANQVLGSIIMFMCVYLL
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFILFVYMLNEKVKHGPEEEIEDDSSTPYHGLHHLVEENHHDTRL
HHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDVLILARIQFALTIMFHYIYPVLSIGLGLIMVIVEGLYIKTKNPIYLRMAQFWTKVFAL
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHHH
TFAIGVATGIVMEFEFGTNWATYSRYVGDVFGSALAAEGVFAFFLESGFLAVVIFGWNRV
HHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
SPKFHFFATTMVCLGAHFSAIWIVIANSWMQTPAGFKIAGEGMNARAEITEFWEMVFNPS
CCCHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCH
SMIRLGHVILGCWLAGAFLVISISAYYLLKKKHQIFARKSIIIGLWVAFITSILQAYSGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SSGKVVAKYQPTKLAAMEALYQTESGVPLTLFGVVNTEEKKIDYAIQIPKLLSFLSFGDF
CCCCEEEEECCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHEEEHHHHHHHHHCCCC
NAEMKGLDQVNPEDWPNVPVIFNVYRLMIAMWALMFSLSIAGLYLWYKKTLENHRGILWL
CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
MVFSAIYAQVANQAGWYSAETGRYPWLVYGLLRISEGLSKSVKANQVLGSIIMFMCVYLL
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFILFVYMLNEKVKHGPEEEIEDDSSTPYHGLHHLVEENHHDTRL
HHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]