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The map label for this gene is ctc

Identifier: 46447228

GI number: 46447228

Start: 1908473

End: 1909027

Strand: Reverse

Name: ctc

Synonym: pc1594

Alternate gene names: 46447228

Gene position: 1909027-1908473 (Counterclockwise)

Preceding gene: 46447229

Following gene: 46447227

Centisome position: 79.07

GC content: 36.58

Gene sequence:

>555_bases
TTGAAAGCAATATTAAGAACAGGCAAAAGCAAAAGCGAAATCAATCGCCTTCGCCGTGAAGGAATGATTCCAGCTGTTCT
ATATGTGAGAGGAAAAGAGGGCGAAACTTTAGCAATTAACAGTGCTGAATTTAATTCTTATCTACGTCATGTGAAATCTG
GTCATCTTCCTACAACAATTTTTACCTTAGTTGATGAAAAGGGTTCAGAACGTCGTGTATTAGTGAAAGACATTCAGTAT
GCGATTACAACTTATCAAGTAATGCATCTTGATTTCGAAGAACTTATCGATGACCATAAAATTAATGTTAAAGTTCCTAT
TGAGTGTACAGGAACTGTAGATTGTGTGGGGGTTAAATTAGGTGGTGTACTTCGTCAAGTCATTCGTCATGCACGTATAC
GTTGTTTACCAAAAGATATGCCATCTTTCTTTGAATTAGATGTGCAAGAGCTGGGACTTAAGCAGTCTAAGCGCTTAAAA
GATATGAATATTCCAGAAACAGTACGCCCTCTTATTGATATGAATGAGGTTGTAGCTGTTATTGTAAAACGTTAA

Upstream 100 bases:

>100_bases
ATAAGAAAAAAATCTATTTCAAACTATCTTTAGTAGGCAGGCTTCAAGTTTATCTTTTTAAAATTTATTTAACTTTATCC
TTTTTGGGGGATTCATGAAA

Downstream 100 bases:

>100_bases
GCTTTTTTTAAAATGTGACAACTTCAACTTCGCAATCTTATCTTTTTGTAGGGCTTGGTAATCCAGGGCTTCAATATGAA
TTAACAAGGCATAACATGGG

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKAILRTGKSKSEINRLRREGMIPAVLYVRGKEGETLAINSAEFNSYLRHVKSGHLPTTIFTLVDEKGSERRVLVKDIQY
AITTYQVMHLDFEELIDDHKINVKVPIECTGTVDCVGVKLGGVLRQVIRHARIRCLPKDMPSFFELDVQELGLKQSKRLK
DMNIPETVRPLIDMNEVVAVIVKR

Sequences:

>Translated_184_residues
MKAILRTGKSKSEINRLRREGMIPAVLYVRGKEGETLAINSAEFNSYLRHVKSGHLPTTIFTLVDEKGSERRVLVKDIQY
AITTYQVMHLDFEELIDDHKINVKVPIECTGTVDCVGVKLGGVLRQVIRHARIRCLPKDMPSFFELDVQELGLKQSKRLK
DMNIPETVRPLIDMNEVVAVIVKR
>Mature_184_residues
MKAILRTGKSKSEINRLRREGMIPAVLYVRGKEGETLAINSAEFNSYLRHVKSGHLPTTIFTLVDEKGSERRVLVKDIQY
AITTYQVMHLDFEELIDDHKINVKVPIECTGTVDCVGVKLGGVLRQVIRHARIRCLPKDMPSFFELDVQELGLKQSKRLK
DMNIPETVRPLIDMNEVVAVIVKR

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_PARUW (Q6MAT1)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_008593.1
- ProteinModelPortal:   Q6MAT1
- SMR:   Q6MAT1
- STRING:   Q6MAT1
- GeneID:   2779647
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc1594
- NMPDR:   fig|264201.1.peg.1594
- eggNOG:   COG1825
- HOGENOM:   HBG731986
- ProtClustDB:   PRK05618
- BioCyc:   CPRO264201:PC1594-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 20968; Mature: 20968

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAILRTGKSKSEINRLRREGMIPAVLYVRGKEGETLAINSAEFNSYLRHVKSGHLPTTI
CCCHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCEE
FTLVDEKGSERRVLVKDIQYAITTYQVMHLDFEELIDDHKINVKVPIECTGTVDCVGVKL
EEEECCCCCCCCHHHHHHHHHHHHHHHEECCHHHHHCCCCEEEEEEEEECCCEEEEHHHH
GGVLRQVIRHARIRCLPKDMPSFFELDVQELGLKQSKRLKDMNIPETVRPLIDMNEVVAV
HHHHHHHHHHHHHEECCCCCCHHHHCCHHHCCCHHHHHCCCCCCCHHHHHHHCHHHHHHH
IVKR
HCCC
>Mature Secondary Structure
MKAILRTGKSKSEINRLRREGMIPAVLYVRGKEGETLAINSAEFNSYLRHVKSGHLPTTI
CCCHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCEE
FTLVDEKGSERRVLVKDIQYAITTYQVMHLDFEELIDDHKINVKVPIECTGTVDCVGVKL
EEEECCCCCCCCHHHHHHHHHHHHHHHEECCHHHHHCCCCEEEEEEEEECCCEEEEHHHH
GGVLRQVIRHARIRCLPKDMPSFFELDVQELGLKQSKRLKDMNIPETVRPLIDMNEVVAV
HHHHHHHHHHHHHEECCCCCCHHHHCCHHHCCCHHHHHCCCCCCCHHHHHHHCHHHHHHH
IVKR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA