| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is traC [H]
Identifier: 46447064
GI number: 46447064
Start: 1702800
End: 1705286
Strand: Direct
Name: traC [H]
Synonym: pc1430
Alternate gene names: 46447064
Gene position: 1702800-1705286 (Clockwise)
Preceding gene: 46447063
Following gene: 46447065
Centisome position: 70.52
GC content: 40.81
Gene sequence:
>2487_bases ATGCGATCATTTTTGCAAAAATTGGGGAATATCGTGGCAGGTTTATTCGGAGAATCCCCTTTTTCATTTTCGTCAGACAC AGCGCAGGCTTTACCGAGCGATCCCTATCCATCAGCTACCCCTCTTTCTGCCTATCTATCTTATGATGTATATGATGAAG ACAATGAATTATTCATCAATAAAAAAAGTTTAGGGTTTGCCATTGAAATGCTTCCTTTGGTTGGAAGTGATCATGCAGCT CAAAAGAATATTCAAAGTCTTTTTGATGAGGTGTTAGAAGAAGGAGAGTCGATTCAGTGCCTTCTTTGGACCGATCACCG CATTGATCCTTTCCTCAATTTCTGGGAGGAGCCTAGAAAACAAAAAGGGGGAATTTTTGCCAAGATTGCTCACCAACGGG TCAAGACTTTTCGCCATCACAAACAGTTTTTTCCCTCTCTTTTTCGCTTTGTACTCTCCTACACTGTCCCATTTAAAGGA GATCTTCAAACAAATGCCCCCTTAATTCAAAAAATGAAGGCCAAAAAAGAGAAGTGTTTAAGAATTTTACGTGCTCTTTC TCGCTCGGCTCGGGTTTGGAAACCGATCGATTTAATGGATGTCGTTGGGGGCATGTGCCAATTTTCTTTCAGTACAGAAG CGGTCACTCCCCTTTGGAACCCCTACCAATCCCTGGCAAGTCAGATTCCAAGAGGAACTAGTTTAGAAATTCAAGAGGGG CAGTTAAAGGCTAATCGTCCCTCCCCTCTGGCGTTCAAAAGTTTTCGAGTAGTGGATTTTCCTGAATTTTGGTCACTCAG CCAGATGCAACATCTGATTGGAGATGTCGAAAGAGATAGCTTCCGTTTACTTTGTCCGTTTTATCTTCACTGGGCAGTGC ATTGTCCAAGTCAACAGTTAGCGGAACAAAAATTTAAAGTGCGTGAGAAATTTGTCGAAAAACAGGGGCAATCCTCTATG TTTTTAAAAATGGTTCCTCAACTGGCAGATGAACTGAAAGAAATCCAATATGCTCGAAAAGAGATATATCAAGGGGCTCG CTATGTCTGGACCAACTTGTCTGTTGGCATTTGGAGCTCTCCTGACAATTTGGTTCATTCAGAAGAAATCCTAAAAGGAA TTTTTCGAAATAATCGCTTCACGTTAGTGGAAAATCAAGCGTTTCCTTTGGCAGCTTTTTTATCGGCATTACCATTAAGT TTGGCAGAGTCTGTTAAAGGACTCAAAAATCTCAATTTTTTTCGAACCACTCTCAATCGAGAGTGTGGTAACTACGTTCC TTTGCAAGGAGAATGGTATGGCACCCTCAAAAGTTCCGGGATTCTATTAGCTGGTCGAAGAGGGCAGCTCATGAATTGGA ATCCTTTTGATAATGACCATGGGAATTACAACATCACAGTCGTTGGAAGAAGTGGATCGGGAAAGTCTGTCTTTATGCAA GAACTGATTTTTAACGGATTAGGAACAGGAGCCAAGGTCTTTGTTTTGGATGTGGGAAGAAGCTTTGACAAACTTTGCCA AGCGTTAGAAGGACAAATGATTGAGTTTTCAAGACAATCTACCATTTGTTTAAACCCCTTCACCAAATTTCCTCTGAATA ACGTTAATGAACTCAATGACTGCATTATTCTCCTTAAATCGATCATCGCCAACATGGCAGATTCCATCAATGGGATGAGT AGTGAACAAATGAGTTTAATCGAAGAATCTATCAAAGAAGTGTGGAAACTTAAAGGTTGTGAAGCCTCTCTAACAGATGT TGCCAACTGGTTAAAACAACACGAAGATGTCCAGGCTCGCAAGATCGGTAGAATGCTATTTCCCTATACCATCGATGGCG TTTTTGGACACTATTTTGAAGGAAAAAATAATGTCGATTTTACCAATCCTTTTGTCTTGATTGAGTTAGAAGAACTGAAA GAAAAAAAAGAGCTACAAGCTGTGGTGCTTCAATTATTGATTTTAACGATTACGGATCAAGCGTTTTTAGGAGATCGTAA AACGCGCTTTTATATTTGTGTAGATGAGGCTTGGGATCTTTTAAGAGCGAATCAGACAGGGCCCTTTATTGAAACCTTGG CAAGACGTCTGCGTAAATACAATGGATCATTAATTGTTGGAACGCAACAATTAGAAGATTTTGACAGCTATCCTGGCGCC AAGGCTGCTTACGCCAATAGTGATTGGGCTTGTTTTCTTCCTCAAGACGATAAAACGATTGCCACTCTTAAGGCAGAATC AAAAATGCCTGAGGGAAAAATTCAAGCAATTGAAAACTTAAATACCTTGCATGGCGTTTATAGTGAAGTTTTGATTTGTC AAGGAAAGTCCTATTCGACGCATCGCTTCTGGTTAGATTCCTTTTCTAATTTGCTTTATAGCACCCAGGCGGCTGACTTT TCTCGTTTGCAAAAGCTACGCGAGCAAGGGAAAAGCTTGGAAGAGGCCATTGAAGAGCTCGTGCAGGAGAAAGCATGTCA CTCTTAA
Upstream 100 bases:
>100_bases GCTAAAGAAAAGATGGGGATAAAAGGGTATTATATCCAACAGGCAGAAAGCATTGAACCAGACCTCTCTTTTTCTATTAA TCAGACAAAGGGACGTTAAC
Downstream 100 bases:
>100_bases ACACAAAAGGAAAAACTTTATGCATTTCTTTGCTCATAGGGATCAACGCGTATGGTCTGACCAATCTGGCCACTGAAGGA ACTTATTGCCAACATTTTCG
Product: putative inner-membrane protein traC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MRSFLQKLGNIVAGLFGESPFSFSSDTAQALPSDPYPSATPLSAYLSYDVYDEDNELFINKKSLGFAIEMLPLVGSDHAA QKNIQSLFDEVLEEGESIQCLLWTDHRIDPFLNFWEEPRKQKGGIFAKIAHQRVKTFRHHKQFFPSLFRFVLSYTVPFKG DLQTNAPLIQKMKAKKEKCLRILRALSRSARVWKPIDLMDVVGGMCQFSFSTEAVTPLWNPYQSLASQIPRGTSLEIQEG QLKANRPSPLAFKSFRVVDFPEFWSLSQMQHLIGDVERDSFRLLCPFYLHWAVHCPSQQLAEQKFKVREKFVEKQGQSSM FLKMVPQLADELKEIQYARKEIYQGARYVWTNLSVGIWSSPDNLVHSEEILKGIFRNNRFTLVENQAFPLAAFLSALPLS LAESVKGLKNLNFFRTTLNRECGNYVPLQGEWYGTLKSSGILLAGRRGQLMNWNPFDNDHGNYNITVVGRSGSGKSVFMQ ELIFNGLGTGAKVFVLDVGRSFDKLCQALEGQMIEFSRQSTICLNPFTKFPLNNVNELNDCIILLKSIIANMADSINGMS SEQMSLIEESIKEVWKLKGCEASLTDVANWLKQHEDVQARKIGRMLFPYTIDGVFGHYFEGKNNVDFTNPFVLIELEELK EKKELQAVVLQLLILTITDQAFLGDRKTRFYICVDEAWDLLRANQTGPFIETLARRLRKYNGSLIVGTQQLEDFDSYPGA KAAYANSDWACFLPQDDKTIATLKAESKMPEGKIQAIENLNTLHGVYSEVLICQGKSYSTHRFWLDSFSNLLYSTQAADF SRLQKLREQGKSLEEAIEELVQEKACHS
Sequences:
>Translated_828_residues MRSFLQKLGNIVAGLFGESPFSFSSDTAQALPSDPYPSATPLSAYLSYDVYDEDNELFINKKSLGFAIEMLPLVGSDHAA QKNIQSLFDEVLEEGESIQCLLWTDHRIDPFLNFWEEPRKQKGGIFAKIAHQRVKTFRHHKQFFPSLFRFVLSYTVPFKG DLQTNAPLIQKMKAKKEKCLRILRALSRSARVWKPIDLMDVVGGMCQFSFSTEAVTPLWNPYQSLASQIPRGTSLEIQEG QLKANRPSPLAFKSFRVVDFPEFWSLSQMQHLIGDVERDSFRLLCPFYLHWAVHCPSQQLAEQKFKVREKFVEKQGQSSM FLKMVPQLADELKEIQYARKEIYQGARYVWTNLSVGIWSSPDNLVHSEEILKGIFRNNRFTLVENQAFPLAAFLSALPLS LAESVKGLKNLNFFRTTLNRECGNYVPLQGEWYGTLKSSGILLAGRRGQLMNWNPFDNDHGNYNITVVGRSGSGKSVFMQ ELIFNGLGTGAKVFVLDVGRSFDKLCQALEGQMIEFSRQSTICLNPFTKFPLNNVNELNDCIILLKSIIANMADSINGMS SEQMSLIEESIKEVWKLKGCEASLTDVANWLKQHEDVQARKIGRMLFPYTIDGVFGHYFEGKNNVDFTNPFVLIELEELK EKKELQAVVLQLLILTITDQAFLGDRKTRFYICVDEAWDLLRANQTGPFIETLARRLRKYNGSLIVGTQQLEDFDSYPGA KAAYANSDWACFLPQDDKTIATLKAESKMPEGKIQAIENLNTLHGVYSEVLICQGKSYSTHRFWLDSFSNLLYSTQAADF SRLQKLREQGKSLEEAIEELVQEKACHS >Mature_828_residues MRSFLQKLGNIVAGLFGESPFSFSSDTAQALPSDPYPSATPLSAYLSYDVYDEDNELFINKKSLGFAIEMLPLVGSDHAA QKNIQSLFDEVLEEGESIQCLLWTDHRIDPFLNFWEEPRKQKGGIFAKIAHQRVKTFRHHKQFFPSLFRFVLSYTVPFKG DLQTNAPLIQKMKAKKEKCLRILRALSRSARVWKPIDLMDVVGGMCQFSFSTEAVTPLWNPYQSLASQIPRGTSLEIQEG QLKANRPSPLAFKSFRVVDFPEFWSLSQMQHLIGDVERDSFRLLCPFYLHWAVHCPSQQLAEQKFKVREKFVEKQGQSSM FLKMVPQLADELKEIQYARKEIYQGARYVWTNLSVGIWSSPDNLVHSEEILKGIFRNNRFTLVENQAFPLAAFLSALPLS LAESVKGLKNLNFFRTTLNRECGNYVPLQGEWYGTLKSSGILLAGRRGQLMNWNPFDNDHGNYNITVVGRSGSGKSVFMQ ELIFNGLGTGAKVFVLDVGRSFDKLCQALEGQMIEFSRQSTICLNPFTKFPLNNVNELNDCIILLKSIIANMADSINGMS SEQMSLIEESIKEVWKLKGCEASLTDVANWLKQHEDVQARKIGRMLFPYTIDGVFGHYFEGKNNVDFTNPFVLIELEELK EKKELQAVVLQLLILTITDQAFLGDRKTRFYICVDEAWDLLRANQTGPFIETLARRLRKYNGSLIVGTQQLEDFDSYPGA KAAYANSDWACFLPQDDKTIATLKAESKMPEGKIQAIENLNTLHGVYSEVLICQGKSYSTHRFWLDSFSNLLYSTQAADF SRLQKLREQGKSLEEAIEELVQEKACHS
Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002789 - InterPro: IPR014117 [H]
Pfam domain/function: PF01935 DUF87 [H]
EC number: NA
Molecular weight: Translated: 94218; Mature: 94218
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSFLQKLGNIVAGLFGESPFSFSSDTAQALPSDPYPSATPLSAYLSYDVYDEDNELFIN CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCHHHHEEEEEECCCCCEEEE KKSLGFAIEMLPLVGSDHAAQKNIQSLFDEVLEEGESIQCLLWTDHRIDPFLNFWEEPRK ECCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH QKGGIFAKIAHQRVKTFRHHKQFFPSLFRFVLSYTVPFKGDLQTNAPLIQKMKAKKEKCL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH RILRALSRSARVWKPIDLMDVVGGMCQFSFSTEAVTPLWNPYQSLASQIPRGTSLEIQEG HHHHHHHHCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEECC QLKANRPSPLAFKSFRVVDFPEFWSLSQMQHLIGDVERDSFRLLCPFYLHWAVHCPSQQL CCCCCCCCCCEECCEEEECCHHHCCHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCHHHH AEQKFKVREKFVEKQGQSSMFLKMVPQLADELKEIQYARKEIYQGARYVWTNLSVGIWSS HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEECC PDNLVHSEEILKGIFRNNRFTLVENQAFPLAAFLSALPLSLAESVKGLKNLNFFRTTLNR CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH ECGNYVPLQGEWYGTLKSSGILLAGRRGQLMNWNPFDNDHGNYNITVVGRSGSGKSVFMQ CCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHH ELIFNGLGTGAKVFVLDVGRSFDKLCQALEGQMIEFSRQSTICLNPFTKFPLNNVNELND HHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCEECCCCCEEEECCCCCCCCCCCHHHHH CIILLKSIIANMADSINGMSSEQMSLIEESIKEVWKLKGCEASLTDVANWLKQHEDVQAR HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHH KIGRMLFPYTIDGVFGHYFEGKNNVDFTNPFVLIELEELKEKKELQAVVLQLLILTITDQ HHHHHHCCEEHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCH AFLGDRKTRFYICVDEAWDLLRANQTGPFIETLARRLRKYNGSLIVGTQQLEDFDSYPGA HHHCCCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCC KAAYANSDWACFLPQDDKTIATLKAESKMPEGKIQAIENLNTLHGVYSEVLICQGKSYST CEEECCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCC HRFWLDSFSNLLYSTQAADFSRLQKLREQGKSLEEAIEELVQEKACHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRSFLQKLGNIVAGLFGESPFSFSSDTAQALPSDPYPSATPLSAYLSYDVYDEDNELFIN CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCHHHHEEEEEECCCCCEEEE KKSLGFAIEMLPLVGSDHAAQKNIQSLFDEVLEEGESIQCLLWTDHRIDPFLNFWEEPRK ECCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH QKGGIFAKIAHQRVKTFRHHKQFFPSLFRFVLSYTVPFKGDLQTNAPLIQKMKAKKEKCL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH RILRALSRSARVWKPIDLMDVVGGMCQFSFSTEAVTPLWNPYQSLASQIPRGTSLEIQEG HHHHHHHHCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEECC QLKANRPSPLAFKSFRVVDFPEFWSLSQMQHLIGDVERDSFRLLCPFYLHWAVHCPSQQL CCCCCCCCCCEECCEEEECCHHHCCHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCHHHH AEQKFKVREKFVEKQGQSSMFLKMVPQLADELKEIQYARKEIYQGARYVWTNLSVGIWSS HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEEECC PDNLVHSEEILKGIFRNNRFTLVENQAFPLAAFLSALPLSLAESVKGLKNLNFFRTTLNR CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH ECGNYVPLQGEWYGTLKSSGILLAGRRGQLMNWNPFDNDHGNYNITVVGRSGSGKSVFMQ CCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHH ELIFNGLGTGAKVFVLDVGRSFDKLCQALEGQMIEFSRQSTICLNPFTKFPLNNVNELND HHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCEECCCCCEEEECCCCCCCCCCCHHHHH CIILLKSIIANMADSINGMSSEQMSLIEESIKEVWKLKGCEASLTDVANWLKQHEDVQAR HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHH KIGRMLFPYTIDGVFGHYFEGKNNVDFTNPFVLIELEELKEKKELQAVVLQLLILTITDQ HHHHHHCCEEHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCH AFLGDRKTRFYICVDEAWDLLRANQTGPFIETLARRLRKYNGSLIVGTQQLEDFDSYPGA HHHCCCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCC KAAYANSDWACFLPQDDKTIATLKAESKMPEGKIQAIENLNTLHGVYSEVLICQGKSYST CEEECCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCC HRFWLDSFSNLLYSTQAADFSRLQKLREQGKSLEEAIEELVQEKACHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2265751; 7915817; 1355084 [H]