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The map label for this gene is traF

Identifier: 46447065

GI number: 46447065

Start: 1705274

End: 1705756

Strand: Direct

Name: traF

Synonym: pc1431

Alternate gene names: NA

Gene position: 1705274-1705756 (Clockwise)

Preceding gene: 46447064

Following gene: 46447066

Centisome position: 70.63

GC content: 40.79

Gene sequence:

>483_bases
ATGTCACTCTTAAACACAAAAGGAAAAACTTTATGCATTTCTTTGCTCATAGGGATCAACGCGTATGGTCTGACCAATCT
GGCCACTGAAGGAACTTATTGCCAACATTTTCGTCTAAACAGCAGCTCTAGCCTCCCTTTTTACATCTTTTCAACATCTT
CCCTTAAAATGGTGGAAAGAAATATGTATGTGTCGCTGACTCATCCTTTTTCTTCTCAAGAACTATTGAAGCAAATTGTC
GGTTTACCAGGTGACCTTATTACGATTCGCGATCAACATGTGTGGGTTAACGACAAAGATTACGGATTTATCTACTCTAC
TTCTCCCTCTGGCCTTGCTCTTTCTCCACTGCCAGAAGGAATCATCCCACAAGGATTTTTCTTTGTCCATGCGACACATC
CTCAAAGTTTTGATTCTCGTTATGCTGAATTTGGCCTTGTTTCCAAAGAGCAGTTAAAGGAGCGTTTATGCCCCCTTTTC
TAA

Upstream 100 bases:

>100_bases
TTTATAGCACCCAGGCGGCTGACTTTTCTCGTTTGCAAAAGCTACGCGAGCAAGGGAAAAGCTTGGAAGAGGCCATTGAA
GAGCTCGTGCAGGAGAAAGC

Downstream 100 bases:

>100_bases
CAGGAATCTTGACAGTTTTGCTTATCTTTTCTTCATTAGAAGCCAAAAATTTAGGAATTTATGGAGCAACTGCTTCAATT
GAGGAAGAAGATCTCCTCAT

Product: putative F pilus assembly protein traF

Products: NA

Alternate protein names: Peptidase; Type IV Secretory Pathway Protease TraF-Like Protein

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSLLNTKGKTLCISLLIGINAYGLTNLATEGTYCQHFRLNSSSSLPFYIFSTSSLKMVERNMYVSLTHPFSSQELLKQIV
GLPGDLITIRDQHVWVNDKDYGFIYSTSPSGLALSPLPEGIIPQGFFFVHATHPQSFDSRYAEFGLVSKEQLKERLCPLF

Sequences:

>Translated_160_residues
MSLLNTKGKTLCISLLIGINAYGLTNLATEGTYCQHFRLNSSSSLPFYIFSTSSLKMVERNMYVSLTHPFSSQELLKQIV
GLPGDLITIRDQHVWVNDKDYGFIYSTSPSGLALSPLPEGIIPQGFFFVHATHPQSFDSRYAEFGLVSKEQLKERLCPLF
>Mature_159_residues
SLLNTKGKTLCISLLIGINAYGLTNLATEGTYCQHFRLNSSSSLPFYIFSTSSLKMVERNMYVSLTHPFSSQELLKQIVG
LPGDLITIRDQHVWVNDKDYGFIYSTSPSGLALSPLPEGIIPQGFFFVHATHPQSFDSRYAEFGLVSKEQLKERLCPLF

Specific function: Unknown

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17931; Mature: 17800

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLNTKGKTLCISLLIGINAYGLTNLATEGTYCQHFRLNSSSSLPFYIFSTSSLKMVER
CCCCCCCCCEEEEEEEHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCEEEEEC
NMYVSLTHPFSSQELLKQIVGLPGDLITIRDQHVWVNDKDYGFIYSTSPSGLALSPLPEG
CEEEEEECCCCHHHHHHHHHCCCCCEEEEECCEEEECCCCCEEEEECCCCCEEECCCCCC
IIPQGFFFVHATHPQSFDSRYAEFGLVSKEQLKERLCPLF
CCCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
SLLNTKGKTLCISLLIGINAYGLTNLATEGTYCQHFRLNSSSSLPFYIFSTSSLKMVER
CCCCCCCCEEEEEEEHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCEEEEEC
NMYVSLTHPFSSQELLKQIVGLPGDLITIRDQHVWVNDKDYGFIYSTSPSGLALSPLPEG
CEEEEEECCCCHHHHHHHHHCCCCCEEEEECCEEEECCCCCEEEEECCCCCEEECCCCCC
IIPQGFFFVHATHPQSFDSRYAEFGLVSKEQLKERLCPLF
CCCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA